LOCUS       XM_006253652            2238 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus proline rich 7 (synaptic) (Prr7),
            transcript variant X1, mRNA.
ACCESSION   XM_006253652
VERSION     XM_006253652.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006253652.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006253652.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2238
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2238
                     /gene="Prr7"
                     /note="proline rich 7 (synaptic); Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 7 ESTs, 1 long SRA read, 7 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 184 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:498704"
                     /db_xref="RGD:1561898"
     CDS             375..1184
                     /gene="Prr7"
                     /codon_start=1
                     /product="proline-rich protein 7 isoform X1"
                     /protein_id="XP_006253714.1"
                     /db_xref="GeneID:498704"
                     /db_xref="RGD:1561898"
                     /translation="MVMSQGTYTFLTCFAGFWLIWGLIVLLCCFCSFLRRRLKRRQEE
                     RLREQNLRALELEPLELEGSLAGSPPGLAPPPPPHRSRLEAPVHAHSHVHVHPLLHHG
                     PAQPHAHPHPHHHALPHPPPSHLSVPPRPWSYPRQAESDMSKPPCYEEAVLMAEPPPP
                     YSEVLTDTRGLYRKIVTPFLSRRDSAEKQEQPPPSYKPLFLDRGYTSALHLPSAPRPA
                     APCPALCLQADRSRRVFPSWTDSELSSREPLEHGAWRLPVSIPLFGRTTAV"
ORIGIN      
        1 ccagcccagc gctcggagcg gctttcgttg ccactgtctg ctccccgggg ccgctgcctt
       61 ctccaagctt ggggttctgt ccgctgggcc gcttgccccg aggcaggaag acgagttcga
      121 ggaggatgcc tgggcccgtc gctcgcggcc ccgggtgaag caggcccgcg ccggccggcg
      181 ccatggaaag gagagggaac cacagttgcc ccccgccggc atgcgcgccc attgagcccc
      241 gccgcaggca gcccccggcc gcaggtcccc gagtgacact ggcggcacct gggagcgtgg
      301 cgcggccccg gggccacgcc gaggagccca gcgtccagta aagctgacga ggacctgccg
      361 cttgcgccgc agccatggtg atgtcccagg gcacctacac gttcctcacg tgcttcgccg
      421 gcttctggct catctggggt ctcatcgtcc tgctctgctg cttctgcagc ttcctgcgcc
      481 gccgcctcaa acggcgccag gaggagcgac tgagggagca gaacctgcgc gccctggagc
      541 tggagcccct cgagcttgag ggcagcctgg ctggaagtcc tccgggcctg gcgccgccac
      601 cgccaccgca ccgcagccgt ctggaggcgc ctgtgcacgc gcactcgcac gtgcacgtgc
      661 accctctgct gcaccacggg ccggcgcagc cgcacgcgca cccgcaccca caccatcacg
      721 cactgccgca cccaccgccg tcgcacctct ccgtgccgcc ccggccctgg agctatccgc
      781 gccaagcgga atcggacatg tctaagccgc cgtgctacga ggaggcggtg ctgatggccg
      841 agccgccgcc gccctacagc gaggtgctca cggacactcg cggcctctac cgcaagatcg
      901 tcacgccctt tctgagccgc cgcgacagcg cggagaagca ggagcagccg cctccgagtt
      961 acaagcctct cttcctggac cggggctata cctcggcgct gcatcttccc agcgccccgc
     1021 ggcccgccgc cccctgccct gccctctgtc tgcaggcgga ccgcagccgc cgtgtcttcc
     1081 ccagctggac cgactcagag ctcagcagcc gagagcccct ggagcacgga gcttggcgcc
     1141 tgcccgtctc catccccttg tttgggagga ctacagccgt atagaggggc gctcggcgtc
     1201 ccgagcccca cgggcgaact cctagcctga ctgcgaggct ttttaaatgc ttcccttgga
     1261 ctgcagggag gggtgggggg agggagggat ttcttaccct gtttgttaca ttttgaggat
     1321 aataaaggtg tgtgatctgc tttggtacaa gcggaggggg ataccagctg ctttaagcac
     1381 aaggtgctag tgaccgggca tgttggacct tagggaagtg cccgagtcct ggcctggggg
     1441 cggagggcgg gcatacggag ttagccctgg gaaaccagag gttgcttctt aagggcggga
     1501 tgttccggct ccttttaacc agcttttgtg cgccccctgt agcctcggag gtgataggag
     1561 ttgggacgcg ggtcgtgagg gccggcgccc acgccagatc aacccctgga ggcccagagc
     1621 agcaggcccg aagggatctg gatttcttta ttaacagaca tgagcacgac ccattacata
     1681 agtttgtgct taaaaaaaaa aaaagttaat gtgaaaaaga acccaagcag agaggaagga
     1741 attggggagg ggccacccaa accactgggt cccatcaata aaccctgact tgaatcacgc
     1801 ctaggacctc cagcctggga cctgcccggc aggagagggc gggaagccaa ggggccccag
     1861 gtgggtctga taattccttt cgaccaagca gcgagggtaa agagaagggg tggggtccca
     1921 gggagccaga gcccacgagc catttattgc catgttttaa atttcgtgca aaatatctga
     1981 agccctggat agagaataca aagtgatatt ttttttccaa gaaacataaa actaggaaaa
     2041 gtgatggggg ggaacatttt cccaccagaa cccccgaccc ccaccaggtc ccaagcaggg
     2101 tgaggcctcc accctggtca gctgagcagg aaggactaag ctacaatctg gtctgggcag
     2161 gaagggggtg gaatctgcaa cattgtttca actaccaacg ggaggaaaac cagtcaattg
     2221 tacaagtcta tcaacttt
//
