LOCUS       XM_039089904            4590 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus proline rich 36 (Prr36), transcript
            variant X1, mRNA.
ACCESSION   XM_039089904
VERSION     XM_039089904.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039089904.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4590
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4590
                     /gene="Prr36"
                     /note="proline rich 36; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 12 ESTs, 2 long SRA
                     reads, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 87 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:501795"
                     /db_xref="RGD:1566084"
     CDS             458..3697
                     /gene="Prr36"
                     /codon_start=1
                     /product="proline-rich protein 36"
                     /protein_id="XP_038945832.1"
                     /db_xref="GeneID:501795"
                     /db_xref="RGD:1566084"
                     /translation="MDKRDRIKSGAVPRMPASRTPGLLNPRPPSGSARPPPPVTSAAL
                     RVLEANGAMGRRPLVERAPGACKATLPQTSKAALPQSTVHGAPARSAGSGPRSPANRP
                     PASGKGERAPMKTAGQGSISSPGRASSGTARPGPVVQKGLQPPTKEPVVRGKTPETPK
                     RNTLSSGTRRVLSADSLGPTSGASSPAITRRPRVPATEVGLPQPTPSARQRPLTTEAP
                     RKPVSSASEHSATELSPAIRRRSVAGGSQQKPVSRSLIPSATPQLSPARSGVSPRATP
                     RGPAHTSQLKSKGQQALHPTQTTVPRKNRPSVQSLVSASSLVARTPPGAPSVQVPDDS
                     LPTTLPPSPPATPPLPASLQLLQAHASSQPMPHSQSGQGSPLPSPLPLQNLPSPPATP
                     PLLAPPACLGTEEASDSLPPRAGISPSLPPITQSMPNHQAPSASLPQEPLSVTPFSPA
                     PLPLAAPPPQLLPSPPGSPQNLPTPLVTPSKLPLSTLTAPPSPVNFSGSPPLPQATPS
                     NRNTPPLQDPLFLAIPPPVSSSSSTSPPLLVPLSSVATPPLRLPPSPTLPTSPASLST
                     SPPALASSPQQATPPPLPLSPLSTQLSMGSLSPQASASFSPTHPVQPHALPSPPLRAS
                     PITHPLPLSSPSASPPLPALLSPPASPPLEDPLSPPASPSSPLATPPPEAPPSLGSPT
                     LSPLTTPPPQASPPALPPLPASTSSLDTGTCSLQGALLALPLLQTSPPLTIPSLQTPS
                     SLALPSLQCPSSPLATATPPLQIPLVVLPTLQTPPSPLTTLPPGAPPGLTSPVVQPPS
                     PPASPPLQAPRRPPTPGPDVPISGPRLTLALAPAAPPPPSRSPSSTLSGPDLAGHSSS
                     ATSTPEELRGYDSGPEGCATISPAPDVELAACHPASWSRSSAPPLAVRGTPGVPLPWP
                     PTAGPGSSDGLCTIYEAEGPESVAPTPGSLDVEPEPRPGPGSAKVTAAACAGASSRSP
                     KSTRLGELPLGALQASVVQHLLSRTLLLAAAEGAAAGSEGGSGGSGGGGISGGSRAPL
                     SDAELGRWAELLSPLDESRASITSVTSFSPDDVASPQGDWTVVEVETFH"
ORIGIN      
        1 agacaccgaa ataggccttt cctagggtat aacagggagg cggcacccgc acctccctcg
       61 gaggcgcgcc tcttttctca gcaccctcgg cacgctcccg gctctggacg gagaacgagt
      121 gcgcgcatcc tccgctctct ctacccgaag ctgggggggc ggggccgcgg ccaagctccc
      181 taggcactgt ggcctgaaac cccctcccct tgccttttcg ctgctccccg ctactgctct
      241 ctggcccagc accaccccag gcgaccccgc gtggagcgga tggtgcccac aggcggaggt
      301 gaacgcgtgc tgtgagcagg tgcctgtgga acctgaggga ggacgctggc gaaaccccat
      361 tggcgtgcac acggaggccc ctgaatctgg aagccggagg catttccctg tttgccggat
      421 tggtcattta ggtttccaag aggcgagggg gtgcggtatg gacaagaggg ataggatcaa
      481 atcaggagct gtcccgcgga tgccggcgtc acgaacccct ggccttctga accctaggcc
      541 tccttctggg tccgctcgac ctcctccccc tgtaaccagt gctgcccttc gagtcttgga
      601 agcaaatgga gctatggggc gaaggcccct ggtggagcga gccccaggcg cctgcaaagc
      661 gactcttcca cagaccagca aagcagctct tcctcagtcc actgttcacg gggcaccagc
      721 gcgcagtgct gggtcaggtc ctcgcagccc agccaacagg cccccagctt ctgggaaagg
      781 agagagggcc cctatgaaga ccgctggcca gggttctatt tctagcccag ggcgtgccag
      841 cagtgggacc gccagaccag gccctgttgt ccagaaggga ctccaacctc cgactaagga
      901 acctgtggtc agaggtaaaa caccagagac gcccaaaagg aacactctga gctctggaac
      961 acgaagagtt ttgtctgcag attctttagg gcccacctca ggagcctcct cccctgccat
     1021 cacccgtcgg cccagggtcc cagctacaga ggtgggactt cctcaaccaa ctcccagtgc
     1081 cagacagcgt cctctgacca ccgaggcacc caggaaacct gtgagcagtg cttctgaaca
     1141 cagtgccacg gagctgagcc cggccattag gaggcgctca gtcgctggtg gcagccagca
     1201 aaagccggtc tcccgttctc tgatccccag tgctactcct cagctctccc cagcccgctc
     1261 cggggtctca ccgcgtgcaa ccccacgggg tcctgcgcat acctcgcagc tcaagtcgaa
     1321 agggcagcaa gctctgcatc caacccagac cacagtccca aggaagaaca ggccctctgt
     1381 acagagcctg gtttctgctt catctttagt cgcacgcact ccacctggtg ctccctctgt
     1441 ccaggtccca gatgattcct tgccgaccac actccctccc tccccacccg ccaccccgcc
     1501 tctacctgct tcacttcaac tactccaagc acatgcttcc tcacagccaa tgccccattc
     1561 acagtccgga cagggctcac cgttaccttc ccctcttcct ctgcagaacc tcccctctcc
     1621 accagctaca ccccctttgc tagctccacc cgcatgtctg ggtactgaag aggcctctga
     1681 ctcactccca ccaagagctg gaatctctcc atcgcttccc cccatcacgc agagtatgcc
     1741 caaccaccag gctccttcag cttcgctccc tcaggaacct ctctcggtca cacctttctc
     1801 acctgctcct ctccctctag ccgcgcctcc tccacaactc cttccttctc cgccaggttc
     1861 cccgcagaat ttacccactc cccttgtcac gccctctaag ttgcctctct ccactctaac
     1921 tgctccccct tccccggtca acttttctgg gtctcctccc ctcccccagg ccacgccctc
     1981 taaccgaaat acgccgcctt tgcaagaccc tctgtttctg gccattcctc cgccggtttc
     2041 ttcctccagc tccacctcac cacctctgct ggtccctctc tcttccgtgg ccacgcctcc
     2101 tctgaggctc ccaccttctc cgactttgcc cacttctccg gcctctttgt cgacctcgcc
     2161 gccagcactg gcctcctcgc cccagcaggc cacgcctcct cctctgccct tgtcccctct
     2221 atccacccaa ctctctatgg gctcactctc tccgcaggcc tcggcttctt tctcgcctac
     2281 ccaccctgtg cagccacacg ctctcccctc gcctcctttg cgggcatctc ctattacaca
     2341 ccctttgcct ctttcctcgc cctctgcctc accccctctg ccggctcttc tgtcccctcc
     2401 tgcctcacca cctctggagg accccctttc tcccccagcc tcaccttcgt ctcccttggc
     2461 aactccccct ccagaagccc caccttcact gggctcaccc actctttcac ccctgaccac
     2521 gccccctccg caagcctcac ctccggcctt gccccctctg ccagcctcta cctcctccct
     2581 ggacacaggc acatgttctc tacagggtgc cctcttggct ttacctcttt tacaaacctc
     2641 tcctcctctg acaataccct ctctgcagac cccatcttct ctggccttgc cctctctgca
     2701 gtgtccctcc tccccactgg ccacagccac accgccccta cagattcccc ttgtggtttt
     2761 acctacttta cagacccctc cttctcccct gaccacgctc cctccggggg cccctcctgg
     2821 cttgacctcg cctgttgttc agcctccttc tcctcctgcc tcacccccac tgcaagcccc
     2881 gcgtcgaccc ccgaccccgg gtccagatgt ccctatctca ggtccacggc tgaccttggc
     2941 gctggcccct gccgctccgc caccgccctc gcgaagcccc tccagtacgc tgagcggccc
     3001 ggacctggca ggccacagca gcagtgccac gagcacaccg gaggagctcc gcggttacga
     3061 tagcgggccc gagggctgcg ctacaatctc cccggccccg gatgtggagc tagctgcctg
     3121 ccacccagcc tcctggagtc gaagttctgc tccgccctta gcagtgcggg gcactccggg
     3181 agttcccctg ccgtggcctc ccactgctgg cccgggttcc tctgacggcc tgtgcaccat
     3241 ctatgaagcc gaaggaccag agtcggtggc cccaacccct ggatctctag atgtggagcc
     3301 agaaccgagg cctggccctg gcagtgctaa ggtgactgct gcagcctgcg caggagcatc
     3361 ctctagaagc ccaaagtcga ctcgccttgg tgagctgccg ctgggggcgc ttcaggcgag
     3421 cgttgtgcag cacctgctga gccggactct gctgctggca gccgcggaag gtgcagcagc
     3481 gggcagcgaa ggtggttcag gaggctcagg gggtggtggt atctctggtg gatcccgggc
     3541 tccgcttagc gatgctgaat tgggccgctg ggccgaattg ctttctcccc tggacgaatc
     3601 gcgtgccagc atcacttcag tcaccagctt ctccccagat gatgtagcct ccccacaggg
     3661 tgattggact gtagtggaag tggagacttt tcattgagcc agacctcagc cctgtccacc
     3721 atacacatac cacattagaa tccacccttc tggttacacc tcttttgtct tagtctccac
     3781 tcccacttcc tgtggtactt ggatggattg tttttttacc tctagagccc tgtgtttggg
     3841 cccaggctgt acccctgttc ttccttggct taggcttggg ccatacccac accaccccag
     3901 gcctagtcct tccatttgag cttctcctct ttggcctaag ccacaccccc ttctccaagg
     3961 agccatgcca ctccgtaagt tcagtggaca acatgatagt ttacatgctg aatggtttac
     4021 atgctggcac ctgtgtgccc tgccactcgg gagctgggag aggatcacag tggtagttcg
     4081 aagggtcagg ctacaccata tcagtggtta tgactgagta aattggagtt ctggctaaac
     4141 tatagaaaag ggctggcaag agagtggcta caatggtctt gtgatttttg ggatctcact
     4201 tctaatgaaa acgttaggtt cacaaaggcc tgggtggatg aactcgagag ccaccgaagt
     4261 tcttactctg gacatggggc agtttgctct cctgggtacc ccttgctata gcccctttgt
     4321 cctgtgtgca ccccttctct tccatgccta tgggggacta acttgcttgg actgaggtgg
     4381 gaatggctac ctattttggg tggcaccatt ccctggctgg aatcttggat tgtgtaagca
     4441 gaaagcaggg cagcaccatg ccttcactcc tctgtttttc ccgattgtga atgctaagtg
     4501 accagctgtt tccagctcct attgccttga ctttcccagt gatagacact accccaaact
     4561 gtgagcgaga ataaaacctt tctcctctaa
//
