LOCUS       NM_212544               1770 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Rattus norvegicus proline rich 3 (Prr3), mRNA.
ACCESSION   NM_212544 XM_347001
VERSION     NM_212544.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1770)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 1770)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 1770)
  AUTHORS   Hurt,P., Walter,L., Sudbrak,R., Klages,S., Muller,I., Shiina,T.,
            Inoko,H., Lehrach,H., Gunther,E., Reinhardt,R. and Himmelbauer,H.
  TITLE     The genomic sequence and comparative analysis of the rat major
            histocompatibility complex
  JOURNAL   Genome Res 14 (4), 631-639 (2004)
   PUBMED   15060004
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC126073.1.
            
            On Jun 10, 2007 this sequence version replaced NM_212544.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC126073.1, EV767777.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1770
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..1770
                     /gene="Prr3"
                     /gene_synonym="Cat56"
                     /note="proline rich 3"
                     /db_xref="GeneID:361788"
                     /db_xref="RGD:1303270"
     exon            1..139
                     /gene="Prr3"
                     /gene_synonym="Cat56"
                     /inference="alignment:Splign:2.1.0"
     CDS             40..600
                     /gene="Prr3"
                     /gene_synonym="Cat56"
                     /note="MHC class I region proline-rich protein CAT56;
                     proline-rich polypeptide 3"
                     /codon_start=1
                     /product="proline-rich protein 3"
                     /protein_id="NP_997709.1"
                     /db_xref="GeneID:361788"
                     /db_xref="RGD:1303270"
                     /translation="MPKRKKQNQPQPPQHLALSERDEPGDEEDERPMGPPSLLGPPPM
                     ANGKPGDPKSVFHRGPPGSRGPMIPPLLSLPPPPRGRGHIRGGLGPRSSPYGRGWWGV
                     NTEPPFPGPGHGGPSREIFYQEPRNPRRLKSWSLVKNTYPPKDSPPMMEDKSDRPVCR
                     HFSKKGHCRYEDHCAFYHPGVNGPPL"
     exon            140..202
                     /gene="Prr3"
                     /gene_synonym="Cat56"
                     /inference="alignment:Splign:2.1.0"
     exon            203..493
                     /gene="Prr3"
                     /gene_synonym="Cat56"
                     /inference="alignment:Splign:2.1.0"
     exon            494..1743
                     /gene="Prr3"
                     /gene_synonym="Cat56"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctgccctcaa atcctgctgc agccattgcc gcagccgcta tgccgaaacg aaagaagcag
       61 aaccagccgc agccgccgca gcatctcgca ctgtccgagc gggacgagcc tggagacgag
      121 gaggacgagc gccccatggg accacccagc cttctgggcc ctccccccat ggctaacgga
      181 aagcctggtg atcccaagtc agttttccac aggggtcctc caggatcaag gggaccaatg
      241 attccaccac tgctgagtct cccacctcct ccccggggta gaggccacat tcggggaggc
      301 cttggtcctc ggtctagccc atacggtcgt ggttggtggg gtgtcaatac tgaacctcct
      361 tttcctgggc caggccatgg gggtccttct agggaaatct tttaccaaga gccaagaaat
      421 ccaagaaggc tcaaaagctg gtctcttgtc aagaacacct acccacctaa ggacagcccc
      481 ccgatgatgg aagacaaatc tgaccgccct gtctgccgac acttttctaa gaagggccac
      541 tgtcgatatg aagaccattg tgccttctac catccaggcg tcaacggacc tcctctgtaa
      601 gactgtgcct tcccacccag gctggaagga gccctctgac ctagtggcca tgcattctct
      661 gtggctccat tatagctact tgaaggctct tctgtcacct tcaggcagtg gcacgtccac
      721 ccctttcatc atctctccca tttggggtcc agagctgtga ctgtcactgg tgcacagtac
      781 acactgtcct ctgatccagg ctgtagagac cttcaggacc ccatcttgct accttccact
      841 gcctcctgga tcttcccctc tgccaaatga ctgctccaca ggaaaccttt ggtgctgttt
      901 cttgtgcatt tgtccacctc tccctcagta ttgccctcag ttcccaagaa ccctggagca
      961 gtctcttatc ctctagctgc ttgttttaag tcctttcacg taaaacccca gtgtttgcag
     1021 ctgccaggaa gtgcactagg ttttccggct tgaggttgag tttgagtgac tggtacagac
     1081 ttgctcccta aacagcctcc acctgctttt ggacgtccta gtttctgtcc gtagcatgag
     1141 ccccaccgct aaggcctgtg gtcactgtgc tttgtgaaac tgtacgcccc ttgtagcctt
     1201 cctcggtgtc tgtggcgttt tttgtgactt cccaacacta gagtaagttt ttctgccaaa
     1261 tcaagtgagg ctcttggtgc cctctagagt tcacctacct cccaaaacgg gaggatgtga
     1321 gacatcttca gactgcctcc ccgtcgtgcc ctcctgttct gtgccctctg gtattctggg
     1381 tctgacacag gccagtgatg tcttggaaag cttccgacgg gcctcccaac acagctcctg
     1441 cctgacccgt tttagttagg ctgtcattgt gaggccacca gccctttgat ttgactttgt
     1501 gaatctccgc ctgtctctgg atggaacctg aacagtactg tctgtcacct ctctgaccct
     1561 cttacttccc tcacactggg tgttttctgt gaaaacagca gtgaacatgt tgggttttga
     1621 acaggcccta aggaagtggg tcaggaggta tgtgtgcaag aggagagaga gcgctagaac
     1681 taagaatgat tttgttttct ttttaatttt ttttatatta gtaataaaca cagtggaaac
     1741 cggaaaaaaa aaaaaaaaaa aaaaaaaaaa
//
