LOCUS       NM_001399121            1326 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus proline rich 22 (Prr22), transcript variant 1,
            mRNA.
ACCESSION   NM_001399121 XM_006244338
VERSION     NM_001399121.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1326)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On Jan 4, 2022 this sequence version replaced XM_006244338.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582419.604267.1,
                                           SRR26360181.2628770.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-167               JAXUCZ010000009.1  1686295-1686461
            168-233             JAXUCZ010000009.1  1686546-1686611
            234-1326            JAXUCZ010000009.1  1687037-1688129
FEATURES             Location/Qualifiers
     source          1..1326
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q11"
     gene            1..1326
                     /gene="Prr22"
                     /note="proline rich 22"
                     /db_xref="GeneID:680177"
                     /db_xref="RGD:1595447"
     exon            1..167
                     /gene="Prr22"
                     /inference="alignment:Splign:2.1.0"
     CDS             56..1309
                     /gene="Prr22"
                     /note="isoform 1 is encoded by transcript variant 1;
                     proline-rich protein 22"
                     /codon_start=1
                     /product="proline-rich protein 22 isoform 1"
                     /protein_id="NP_001386050.1"
                     /db_xref="GeneID:680177"
                     /db_xref="RGD:1595447"
                     /translation="MQHPKTLYPPAIPQESFSLQNLEGPEVPGGSEPLPTVANANLHY
                     QNPGSDQEVLPAPPAGFQMAPCGCFFDPRIYRIEWATSDFGQSSLYKVAVAGGPALSG
                     GYLLEAPSYLKTPGPPPLLYPHYQPAPSGPQYLTHFLPPEEPMPEALGFMRDGGPLNF
                     MEVLRDGLAPPPTPKETKPSPLLITVPTAHTLPPGPYGHLGGQTSQFPGPQVTMRPTE
                     APRELQSSGAARPGLQFPPGPGEPTVAKVEEVTPVGSSETVPPEVARAFFLPDKVLLE
                     DAMKLFDCLPGGTEPEVALHRGPGPGLRDSGGGGDDFPTDIRSLHLPDDLLSFDYSVP
                     EILDAVANVDYVFSFKALEDEPLPHLGAPVTDTAAPGLRSHQPGKKPSTSTKKGKPSG
                     RHRQATGLAGTTATGPRLDPGATPN"
     exon            168..233
                     /gene="Prr22"
                     /inference="alignment:Splign:2.1.0"
     exon            234..1326
                     /gene="Prr22"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtccccaggt gcctctgctg ccacccgggc ccccccgggg tggcctgtct cacccatgca
       61 gcatcccaaa accctctatc ccccagccat accccaggaa agcttcagcc tgcagaacct
      121 ggagggccct gaggtaccag gtggctcaga accccttccc actgtagcca atgctaacct
      181 gcactatcag aaccccggct ctgaccagga agtgcttcca gcccctccag caggcttcca
      241 gatggctccc tgcggctgct tcttcgaccc ccgcatctac cgcatcgagt gggccacctc
      301 cgactttggc cagtcatccc tgtacaaggt ggcagtggct gggggtcctg ccttatctgg
      361 tggctacctg ctggaggccc cgtcctacct caagaccccg gggccaccac ctctgcttta
      421 tccccactac cagccggccc ccagcgggcc acagtacctc acacatttcc ttccaccaga
      481 ggagcctatg cctgaggctc tgggcttcat gcgggacgga gggcccctca acttcatgga
      541 ggtgctcaga gacggcctgg cacccccgcc aacccccaaa gagactaagc catctccctt
      601 gcttatcaca gtccccacag cacacacgct gccacctggg ccctatggcc atctcggtgg
      661 ccagaccagc cagtttccag gaccccaggt gaccatgagg cccaccgagg cccccaggga
      721 gctgcagagt agtggtgcag ccaggccggg tctgcagttc cctcctgggc ctggagagcc
      781 cacggtggcc aaggtggagg aggtcacccc agtgggctca agtgagaccg tgcctcccga
      841 ggtggctcgt gcgttcttcc taccagacaa ggtccttcta gaagatgcca tgaaactttt
      901 tgattgtctc cctggtggca ctgaacctga ggtggccttg cacaggggtc ctggccccgg
      961 actgcgggac agtggtggtg gtggggacga cttcccaact gacatccgct ccctgcacct
     1021 gccagatgac ctgctgtcct ttgactacag tgtccctgag attctggacg cggtggccaa
     1081 cgtggattat gttttcagct tcaaggccct ggaggatgag ccgctgcccc atcttggggc
     1141 ccctgtcact gacacggcgg cccctggcct gcggtcccat caaccgggga aaaaaccgag
     1201 cacatccacc aagaaaggga aaccaagcgg tagacacagg caggccactg gccttgctgg
     1261 caccactgcc acaggaccca ggctggaccc aggagccacc cccaattaaa gccatttgat
     1321 ctctca
//
