LOCUS       NM_001401701            1918 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus proline rich 14 (Prr14), mRNA.
ACCESSION   NM_001401701 XM_039101218
VERSION     NM_001401701.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1918)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Feb 18, 2022 this sequence version replaced XM_039101218.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643294.4263.1,
                                           SRR26360176.442851.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-29                JAXUCZ010000001.1  191514428-191514456
            30-101              JAXUCZ010000001.1  191515235-191515306
            102-270             JAXUCZ010000001.1  191515428-191515596
            271-392             JAXUCZ010000001.1  191516695-191516816
            393-582             JAXUCZ010000001.1  191516885-191517074
            583-626             JAXUCZ010000001.1  191517454-191517497
            627-736             JAXUCZ010000001.1  191517629-191517738
            737-1310            JAXUCZ010000001.1  191518086-191518659
            1311-1380           JAXUCZ010000001.1  191518791-191518860
            1381-1472           JAXUCZ010000001.1  191518939-191519030
            1473-1544           JAXUCZ010000001.1  191519268-191519339
            1545-1918           JAXUCZ010000001.1  191519432-191519805
FEATURES             Location/Qualifiers
     source          1..1918
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q37"
     gene            1..1918
                     /gene="Prr14"
                     /gene_synonym="AABR07005779.1; Mecp2; MECP2_e1"
                     /note="proline rich 14"
                     /db_xref="GeneID:691898"
                     /db_xref="RGD:1594592"
     exon            1..29
                     /gene="Prr14"
                     /gene_synonym="AABR07005779.1; Mecp2; MECP2_e1"
                     /inference="alignment:Splign:2.1.0"
     exon            30..101
                     /gene="Prr14"
                     /gene_synonym="AABR07005779.1; Mecp2; MECP2_e1"
                     /inference="alignment:Splign:2.1.0"
     CDS             79..1821
                     /gene="Prr14"
                     /gene_synonym="AABR07005779.1; Mecp2; MECP2_e1"
                     /note="methyl CpG binding protein 2"
                     /codon_start=1
                     /product="proline-rich protein 14"
                     /protein_id="NP_001388630.1"
                     /db_xref="GeneID:691898"
                     /db_xref="RGD:1594592"
                     /translation="MDLPGDSSPSTQPSLCRQPLARALWEARSPKRPRLQPLGSPSSL
                     EKASRRVLAVVLEDVMATNRVPLAHKADVPSLLNHNHQQDSVCTQSPTLPSHQVKWSL
                     EARPPDPLHLCREPLSRIRQSSPTSRMRSRMAPGPEESPSQKTDQVPQPTLVVVLKDI
                     ASARQPVEGFAEDQPNLIVPAQRAEPVTKAGQPMPTPSDLEPPFQLSTLPADPPESPV
                     PEPALETPLTPTSSSLLRPRLSPWGLAPLFRSVRSKLESFADIFLTPNKAPQPPPPPP
                     PMKLELKIAISEAEQSKATEKMTSVSPRPPIRQWRTQCNSPAPVPKLPLGRSYSCPDL
                     GPPDPGSWPPVPAQSSQSRPRRHTVGCGEMARTPPPPRPCLRKEVFPLGGVGVSPSLA
                     TSCSANASASFFCEPAEPRLGSTKGKELRATKDKVVSDPEKKTLGKVSRFRIRRTPVR
                     LQPNLTPMGLPRPIRLNKKEFTLEEIYTNKNYQSPTARRTFETIFEEPQERNGTLIFT
                     SSRKLRRAVEFRDSSLPRSRRPSRGVRTAASRTLTPNLAPSQDVGSLLQERLKELDAL
                     LLEEEIDREHPCHL"
     exon            102..270
                     /gene="Prr14"
                     /gene_synonym="AABR07005779.1; Mecp2; MECP2_e1"
                     /inference="alignment:Splign:2.1.0"
     exon            271..392
                     /gene="Prr14"
                     /gene_synonym="AABR07005779.1; Mecp2; MECP2_e1"
                     /inference="alignment:Splign:2.1.0"
     exon            393..582
                     /gene="Prr14"
                     /gene_synonym="AABR07005779.1; Mecp2; MECP2_e1"
                     /inference="alignment:Splign:2.1.0"
     exon            583..626
                     /gene="Prr14"
                     /gene_synonym="AABR07005779.1; Mecp2; MECP2_e1"
                     /inference="alignment:Splign:2.1.0"
     exon            627..736
                     /gene="Prr14"
                     /gene_synonym="AABR07005779.1; Mecp2; MECP2_e1"
                     /inference="alignment:Splign:2.1.0"
     exon            737..1310
                     /gene="Prr14"
                     /gene_synonym="AABR07005779.1; Mecp2; MECP2_e1"
                     /inference="alignment:Splign:2.1.0"
     exon            1311..1380
                     /gene="Prr14"
                     /gene_synonym="AABR07005779.1; Mecp2; MECP2_e1"
                     /inference="alignment:Splign:2.1.0"
     exon            1381..1472
                     /gene="Prr14"
                     /gene_synonym="AABR07005779.1; Mecp2; MECP2_e1"
                     /inference="alignment:Splign:2.1.0"
     exon            1473..1544
                     /gene="Prr14"
                     /gene_synonym="AABR07005779.1; Mecp2; MECP2_e1"
                     /inference="alignment:Splign:2.1.0"
     exon            1545..1918
                     /gene="Prr14"
                     /gene_synonym="AABR07005779.1; Mecp2; MECP2_e1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgaaaacccc ggatccttgg aaagctgcgg cctcagcctg ggatccccca gggactcccc
       61 ggaaccgccg cttcccccat ggatttgcct ggggactcca gcccttctac acagccaagc
      121 ctgtgccgtc agcctctagc tcgagcatta tgggaagcca ggagcccgaa aagaccgagg
      181 ctgcagcctt tggggagccc ttcatccctg gaaaaggcct ctcggagggt cctggccgtg
      241 gtgctagaag atgtcatggc tacaaacagg gttcccctgg cacacaaagc agacgtcccc
      301 agcctactga atcacaacca tcagcaggat tctgtctgca ctcagtcacc cactttacca
      361 tcccaccagg tcaagtggtc cttggaagcc aggcctcctg acccactgca tttgtgcaga
      421 gaacccttga gtcgtatccg ccagtcctca cccacctcga ggatgagatc aaggatggcc
      481 cccggcccag aggagagccc ttcacaaaag acagaccagg tcccccagcc caccctggtg
      541 gtggtactga aagacattgc cagtgccaga caaccagttg agggttttgc tgaagatcag
      601 cccaacctca ttgtcccagc acaaagagct gagcctgtga caaaagctgg tcagccaatg
      661 cctacaccca gtgacctaga acccccattt caactgtcca ctctgcctgc agatcctcca
      721 gaaagcccag taccggagcc tgctctggag accccactga ccccaacatc gtccagtctt
      781 ttacgccccc gtctcagtcc ctggggcttg gcccccctct tccgttccgt ccgatcgaag
      841 cttgaaagct ttgctgacat cttcctcaca cccaacaaag cgccacagcc tccaccccct
      901 ccacctccca tgaaactgga gttgaagatt gccatctcag aggctgagca gtccaaggct
      961 actgagaaaa tgacatctgt cagcccccgg ccccctatcc gccagtggcg gactcagtgc
     1021 aattccccag cacctgtccc taagttacct ctgggacgaa gctattcctg ccctgatcta
     1081 gggccccctg acccaggtag ctggcctcct gttccagccc agtcaagcca gtccaggcct
     1141 cggagacata ctgtgggttg tggggagatg gcccggaccc caccacctcc tcggccctgt
     1201 ctccggaaag aggtcttccc tcttggagga gtgggagtct caccttctct tgctacatct
     1261 tgttcagcca atgcctctgc ttccttcttc tgcgagccag ccgaacccag attaggttca
     1321 acaaagggga aggagttaag agcgacgaaa gacaaggtgg tttctgatcc agagaagaag
     1381 accctgggga aggtttctag attcagaata cggaggacac ctgtccgtct acaaccaaac
     1441 cttacaccaa tggggctgcc tcgaccaatc aggttgaata agaaggagtt cacattggaa
     1501 gaaatttata ccaataagaa ttaccaatca cccacagcca gaaggacctt tgagaccatc
     1561 tttgaggaac cacaggagcg caatggaact ctgattttta ccagctctag gaagctccga
     1621 agggcagtag agtttcggga cagtagcctt cctcgatccc ggcgaccatc acgaggggtc
     1681 cgaactgcag ccagcagaac ccttactccc aatctggcac ccagccagga tgtgggatct
     1741 ctactgcaag aacgactgaa ggagctagat gccttgctcc tagaggagga gatagacagg
     1801 gaacaccctt gtcacctcta ggagctccaa ctgtttgtcc atccgtcctt tagggagggg
     1861 agaaatctct gaatcaattg tatttttttc tctatatttc tataaagttt tcaatata
//
