LOCUS       XM_039094046            7489 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus proline rich 12 (Prr12), transcript
            variant X1, mRNA.
ACCESSION   XM_039094046
VERSION     XM_039094046.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 3, 2024 this sequence was replaced by
            NM_001427852.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7489
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7489
                     /gene="Prr12"
                     /note="proline rich 12; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 34 ESTs, 2 long SRA
                     reads, 6 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 195
                     samples with support for all annotated introns"
                     /db_xref="GeneID:361569"
                     /db_xref="RGD:1309896"
     CDS             475..6573
                     /gene="Prr12"
                     /codon_start=1
                     /product="proline-rich protein 12"
                     /protein_id="XP_038949974.1"
                     /db_xref="GeneID:361569"
                     /db_xref="RGD:1309896"
                     /translation="MDRNYPSAGFGDPLGAGAGWSYERSAKASLVYGSSRTSHPETDI
                     LHRQAYAAPHPLQSYATNHHPAGLSGLFDTGLHHAGSAGPDASVMNLISALESRGPQP
                     GPSASSLLSQFRSPSWQTAMHTPGPTELFISGALPGSSTFPSSSALSAYQHPASFGSR
                     PFPVPSSLSLQDPPFSPPANGLLSPHDVLHLKPSQAPTVPSSLGFERLAGGGVLGPAG
                     LGPAQTPPYRPGPPDPPPPPRHLPTQFNLLASSSAATAAEPSSPQLYNFSGAAPGPPP
                     ERALPRQDTVIKHYQRPASAQPPPPPPPAHSLQHYLSCGGSYPSMGHRASLACSPLGG
                     GEPSPGAGEPSKGGPSGATAGAAGRAAGPETAGGGAAAGGGGYRPIIQSPGYKTSKGG
                     YGPATGGATRPPPPRSTATPKCQSLGGPAAAYATGKASGAGGAGSQAYSPGQPQGLLG
                     PQAYGQGFGGGQAQDLSKGPNYSGGPPQPPSGPPPPGLATCQSYSPDQLQGQLYGVQS
                     EPYPGPAAHSQGLPTASPSLSYSTGHSPALSGHGGGWGPSSLGGGGEASPSHIIRPLQ
                     SPPATGRPPGVGSPGAPGKYLSSVLASAPFLAPPGASSYAAGAGGYKGKGDGSELLAG
                     PGGAAAERTEDEEFLIQHLLQAPSPPRTSGADGLVGEDGPADASKGLGGSGGAGGPPG
                     TPYELAKEDPQRYHLQSVIRTSASLDEGATAALELGLGRMKDKKKGPERGGETPEGLA
                     TSVVHYGAGAKELGAFLQKSPPPPPPTAQATQPTPHGLLLEAGGPDLPMVLPPPPPQL
                     LPSVLSHAPSPSSSAPKVGVHLLEPGTRDGAPQPPPPPPPPPMPLQLEAHLRGHGLEP
                     TAPSPRLRPEESLEPPGAMQELLGALEPLPPGPGDTGVGPPNPEGKDPTGAYRSPSPQ
                     GTKAPRFVPLTSICFPDSLLQDEERSFFPTMEEMFGGGAADDYGKAGQTEDDGDPKTG
                     AGPPPGPTAYDPYGPYCGGRASGTGPETPGLGLDPNKPPELPSTVNAEPLGLIQSGPH
                     QSAPPPPPPPPPPPPVSEPKGGLTSPIFCSTKPKKLLKTSSFHLLRRRDPPFQTPKKL
                     YAQEYEFEADEDKADVPADIRLNPRRLPDLVSSCRSRPALSPLGDIDFCPPNPGPDGP
                     RRRGRKPTKAKRDGPPRPRGRPRIRPLEGPAMAGPASASITTDGAKKPRGRGRGRGRK
                     AEEMGGTRLEPLKPLKIKLSVPKVGEGLGAPSNDVISGVDHNSLDSNLTREKIEAKIK
                     EVEEKQPEMKSGFMASFLDFLKSGKRHPPVYQAGLTPPLSPPKSVPASVPTRGLQPPP
                     PTVPTVPHPAPSGPFGLGGALEAAESEGLGLGCPSPCKRLDEELKRNLETLPSFSSDE
                     EDSVAKNRDLQESISSAISALDDPPLTGPKDTSTPEEPPLDTGPTASGPPPLPSLPST
                     NSNGTPEPPLLEEKPPPTPPPAPTPQPAPPPPPPPVPALPSPAPLVTPVASSPPPPQP
                     PPPPALPSPPPPPPPAPTTVPPVAPPEEPAAPSPEDPEPPDARPLHLAKKQETAAVCG
                     ETDEEAGESGGEGIFRERDEFVIRAEDIPSLKLALQTGREPPPIWRVQKALLQKFTPE
                     IKDGQRQFCATSNYLGYFGDAKNRYQRLYVKFLENVNKKDYVRVCARKPWHRPPLPVR
                     RSGQTKGPTPVGGNAAPPSKVPAPPPKPETPEKMTSEKPPEPTPEPAVPEPPAPEKPS
                     PPRPAEKEKEKEKERVTRGGDRPLRSERAASGRQMRTDRSLAPGQSTTSRLPKARPSK
                     VKAEPPPKKRKKWLKEAVGSASAGDGPGCSSSDSESSPGAPSEDERAVPGRLLKTRAM
                     REMYRSYVEMLVSTALDPDMIQALEDTHDELYLPPMRKIDGLLNEHKKKVLKRLSLSP
                     ALQDALHTFPQLQVEQTGEGSPEEGAVRLRPAGEPYNRKTLSKLKRSVVRAQEFKVEL
                     EKSGYYTLYHSLHHYKYHTFLRCRDQTLAIEGGAEDLGQEEVVQQCMRNQPWLEQLFD
                     SFSDLLAQAQAHSRCG"
ORIGIN      
        1 cgcccgcccc ccttcccctc ccccctcccc cagccgcctt gtgcaaagat ggctgcaccg
       61 tgaacgcaga ggaggaggag gcggcggcgg cggcggcgaa agagcgagca cccagcgccc
      121 gcacccactc cggggccgtc cgggacgccc cctcccgagc gcgcttcccc cttctctctt
      181 gcaagcgccg gggcaaaggc ggagacagcg gggtccctcc tccccccttt ccctcctcca
      241 gggggaaccc cccctccttg gctcagcggc tgcacccctc ctttgcccgc ccctccgtcc
      301 ctgccccctc cctcccccgc ccggggcctt cccgggcctt cggtggccgc aaagaaaaaa
      361 aaagagaaag ggtggaaaaa agcagcggag ggagcggcgg cggaggagag cgcgcgcgct
      421 ccccctcctt tccccctccc tccccctccc cccaatttcc accgcggcca attcatggac
      481 aggaactacc ccagcgccgg cttcggggac ccgctcggcg ccggggcggg atggagttac
      541 gagaggtcag cgaaagctag cttggtctac ggcagctccc ggacttccca cccagaaacc
      601 gacatcttgc atcgtcaggc ctacgctgcc ccccacccac tacaaagcta tgccaccaac
      661 caccacccag caggcctctc tggacttttt gacactggcc tccaccacgc gggctcagca
      721 gggcccgacg cctccgtcat gaacctcatc tcggccctgg agtcccgggg cccccagcct
      781 ggcccttccg cctcctcact cctttcccag ttccgaagtc cttcctggca gacagccatg
      841 cacacaccag gccccacgga actcttcatc tctggtgccc tcccaggttc cagcaccttc
      901 ccgtcttcct ctgccctgtc tgcctaccag cacccggctt ccttcggcag ccgccccttc
      961 ccagtgccct catccctcag cctccaggat ccacccttca gtcctcctgc taatgggctc
     1021 ttgtcccccc atgatgtgct ccacctgaag ccctcccagg ctcctacagt gccctcttca
     1081 ttgggttttg agcgcctggc agggggtggt gtcttggggc ctgcgggcct tggtcctgct
     1141 cagactcccc cttaccgtcc tggtccccca gatccacctc cacctccccg ccacctcccg
     1201 actcagttca atctgctggc ttcttcttct gctgccacag ctgccgagcc atcttcccct
     1261 cagctctaca acttctcggg tgctgccccg ggtccaccgc cggagcgggc cctgccccga
     1321 caggacacgg tcatcaaaca ctatcagcgg cctgccagtg cccagccccc accgccccca
     1381 ccaccagccc attccctgca gcactatctg agctgtggag gcagctatcc ctcaatgggc
     1441 caccgggcca gcttggcttg cagccctctg ggaggtgggg aaccctctcc aggggctgga
     1501 gaacctagca agggtgggcc tagtggggcc acagctggag cagctggtcg ggctgcaggc
     1561 ccggagacgg ctgggggagg tgcagctgca ggtggtggtg ggtaccgccc tatcatccag
     1621 tcccctggtt ataagacgag taagggaggt tatggaccag ctacaggagg tgccaccaga
     1681 cccccaccac ctcgatccac cgccacaccc aagtgtcaga gcctgggtgg accagcagct
     1741 gcttacgcca ctgggaaagc ctctggggct ggtggggctg ggagccaggc atattctcct
     1801 ggccagcccc aagggcttct gggaccccag gcctatgggc aaggatttgg agggggtcaa
     1861 gcacaggact tgagcaaagg ccctaactat tctgggggtc cccctcagcc ccccagtggt
     1921 cccccacctc ctggcctggc tacctgtcag agttactctc cagaccagct tcagggtcag
     1981 ctctatgggg tacagagtga gccttaccca gggccagctg cccattcaca ggggctcccc
     2041 acagccagcc cttccctcag ctacagtact ggtcactccc ctgctctctc gggccatgga
     2101 ggtggctggg gacccagttc tctgggaggt ggtggggagg ccagcccatc tcacattatc
     2161 cggcccctcc agtcaccgcc tgctactggc cgccctcctg gcgttggctc tccaggagcc
     2221 cctggcaaat acttaagttc agtcttagct tcggctccat tcctggcacc ccccggagct
     2281 agcagctatg cagctggagc cggtggctac aagggaaaag gtgacggctc cgagctgctt
     2341 gccggccctg gtggtgctgc cgctgagcgc acggaagatg aagaatttct gattcagcac
     2401 ctgcttcagg cacccagccc acctcggacc tcaggggcag atggcttggt aggtgaggat
     2461 gggcctgctg atgcctccaa gggacttggg ggcagtggtg gagccggagg accgccaggc
     2521 acaccctacg aattagccaa ggaagatccc cagaggtacc acctgcaaag cgtcatcagg
     2581 actagtgcca gtctggacga gggtgccacg gccgccctgg agctgggcct ggggaggatg
     2641 aaggacaaga agaaggggcc agagcggggc ggcgaaactc ctgaggggct agccacctca
     2701 gttgttcact atggagccgg tgccaaggag ctcggagcct tcttgcagaa gagcccacct
     2761 cccccaccac ccacggccca ggcaacccag ccaacgcccc acggcctcct cttggaggct
     2821 ggaggtcctg accttccaat ggtgctgcct ccacctcctc cccagctgct cccttctgtg
     2881 ctcagccatg cccccagccc ctcatccagt gcccccaaag tcggcgttca cctcctcgag
     2941 ccaggcaccc gggatggggc tccccagccg ccgccgcccc cacccccacc acctatgcct
     3001 ctgcagcttg aagcccacct tcgcggccat ggcctggaac ccacagcccc aagtcctcgc
     3061 ttacgacctg aggaaagcct ggaacctcct ggagccatgc aagaactact tggggccctg
     3121 gaaccattgc caccagggcc tggggatacc ggtgtgggac cacctaaccc agagggcaag
     3181 gatcctacag gcgcctaccg aagccccagc cctcaaggga ccaaggcacc gcggttcgta
     3241 cccctcacgt ctatctgctt ccccgactca ttgcttcagg atgaggagcg gagctttttc
     3301 cccaccatgg aggagatgtt tggtggaggg gcagccgatg actatggcaa ggctggacaa
     3361 accgaagatg atggagatcc caaaactggt gctggtccac cccctggtcc cactgcttac
     3421 gatccctatg gcccctactg tggaggccgg gcgtctggaa ctggaccaga gactccaggc
     3481 ctgggtctgg accccaacaa accgcccgag ctcccctcca cagtcaacgc agagccactg
     3541 ggcctgatcc agagtgggcc acaccagtcg gcgcccccac ctccccctcc gccgccgcca
     3601 ccaccacccg tctctgagcc caagggtggc ctcacctcgc ccatcttctg ctcaaccaag
     3661 ccaaagaagc tgctgaagac gtcctctttc cacctgctac gccgccgaga tccccccttc
     3721 cagacgccca agaagctgta tgcgcaggag tacgagtttg aggccgatga ggacaaagcc
     3781 gacgtacccg cagatatccg cctaaacccg aggcgtctgc ccgacctggt gtctagttgt
     3841 cgctcccggc cggccctctc accgctggga gatatagact tctgcccacc caaccctggc
     3901 cctgatggcc ctcgtcgtcg tggccgcaag cccaccaagg caaagagaga cggccctccc
     3961 cgacccaggg ggaggcccag gattcgtcca ctggagggcc ctgccatggc aggtccagcc
     4021 tcagcctcca taaccactga cggggccaag aaacctcggg gccggggccg gggcagaggc
     4081 aggaaggctg aggaaatggg aggtacccgg ttggagcctc tgaagccgct taagatcaag
     4141 ctgtctgtgc ccaaggtcgg tgagggtctg ggagcaccct ccaacgatgt catctcgggt
     4201 gtagaccaca acagcctgga ttccaacctg acccgggaga aaattgaggc caagatcaag
     4261 gaggtagagg agaaacagcc ggagatgaag tcaggcttca tggcttcttt ccttgacttt
     4321 ctcaagtcag gcaagcggca cccaccagtc taccaagctg gcctgacgcc accactaagc
     4381 ccccctaaga gtgtgccagc ctctgtgccc acccgaggcc tgcagccccc accacccacc
     4441 gtgcccactg tgccgcaccc ggcaccttct ggtccttttg gcctgggagg tgccttagag
     4501 gctgcggaga gcgaggggct ggggcttggc tgcccttcgc cctgcaagcg actggacgaa
     4561 gagctgaagc gcaacctaga gacgctgcct tccttctcct cggatgaaga agactccgtg
     4621 gccaagaacc gagacctgca ggagagcatt tcctcagcca tctcggccct ggacgatcca
     4681 cccctcacag ggcctaagga cacgtccaca ccggaggagc cacctctaga cactggacct
     4741 acagcctccg gtccaccccc tctcccaagt ctgcccagca ccaacagcaa tggcacgcct
     4801 gagcccccgc tgttggagga gaagccccca cctactccac ctcctgcccc aacacctcag
     4861 ccggccccac ctccaccccc acccccagtt ccagccttgc cctcacctgc cccactggtg
     4921 actcctgtgg ctagctcacc tccaccacca cagccaccgc ctccaccagc gctgccctca
     4981 ccacctccac cgcccccgcc agcacccaca actgtcccac cagtcgcccc tccagaggag
     5041 cctgctgccc cgtctccaga ggaccctgaa cccccagatg ctcggccttt gcacctggcc
     5101 aagaagcagg agacagcagc tgtgtgcggg gagacggatg aggaggctgg ggagagtggc
     5161 ggagagggca tcttccgaga gcgggatgag ttcgtcattc gtgcggagga cataccctcc
     5221 ctcaagctgg ccctgcagac tggccgggag cccccaccca tctggcgtgt ccagaaggcc
     5281 cttctgcaga agttcactcc agagatcaag gatggccaga ggcagttttg tgctaccagt
     5341 aattatttgg gttattttgg ggatgcaaaa aaccggtacc agcgcctcta tgtgaagttc
     5401 ttggagaatg tcaacaagaa ggattatgtg agggtgtgcg cccggaaacc ctggcaccgg
     5461 cccccactgc cagtcagacg gtctggtcag accaagggcc ctacccctgt tgggggcaat
     5521 gctgcacctc cctctaaagt cccagcccca cctcctaagc ctgagacccc tgagaaaatg
     5581 acgtcagaga agcctccaga gccaacacct gagcctgctg tacccgagcc ccctgcccca
     5641 gagaagccat ccccacctcg acctgcggag aaggagaagg agaaggagaa agagagggta
     5701 acccgtggtg gtgatcggcc tttgcggagc gaacgggccg ccagtgggcg gcaaatgcgg
     5761 actgaccgga gcctagcccc agggcagtcc accacctccc ggctgcccaa agccaggccc
     5821 tcgaaggtca aggccgagcc gcctccaaag aagaggaaga agtggctgaa ggaggcagtg
     5881 ggcagtgcct cagcgggtga tggccctggg tgcagctcat cagactccga gtcctcccct
     5941 ggtgcaccca gcgaggacga gcgggcagtt ccaggacggc tgctgaagac acgggccatg
     6001 cgggagatgt acaggagcta tgtggagatg ctggtgagca cagccctgga cccagacatg
     6061 atccaggccc tggaagacac acatgatgaa ctctatcttc cacccatgcg gaagattgac
     6121 ggcctcctca atgagcacaa gaaaaaggtc ctgaagcggc tgtcactgag cccagcgctg
     6181 caggatgccc tgcacacgtt cccacagctg caggtggagc agactggaga aggctccccc
     6241 gaagagggag ctgtgcggct gcggcctgca ggggagccct ataaccgaaa gaccctcagc
     6301 aagctcaaga gaagtgttgt gcgggcccag gagttcaagg tggagctgga gaagtcgggg
     6361 tactacaccc tctaccactc tctgcaccac tacaaatacc acacgtttct gcgctgccga
     6421 gaccagaccc tggccatcga gggtggtgct gaggacctgg gtcaagagga ggtagtccag
     6481 cagtgcatga ggaaccagcc atggctagaa cagctgttcg actccttcag tgacctgctg
     6541 gcccaagcac aggcccatag ccgctgtggg tgaccacacc ctgcctggcg agggggacac
     6601 ctcctccatg aactgagaac tggacagaac tgtcctccgg agctgactcc taggctccct
     6661 tgctgccagg agggaagggg tcgtcctcag ccagggtgtg tccacacagc cccctctact
     6721 ccctttcaca ccctccccca ttcgtgtaca gagaaattat ttatatatat gtataaatgt
     6781 ctatttagta acacttgccc tgtcccctgg cccagccccc ccaacacagc catcgcccct
     6841 gcccctccac cgtgtacata atgtatagga aaattctatg tatggttgag ggaggcaggg
     6901 cggcttgaga gaaccgggga accccctctc ccctccaagc tccccctccg ggccaacatc
     6961 tttgctaaag gctgctcccc aagggcgtgt ggtgttgggt gggaggggcc aaacatcttg
     7021 ttaattattt ttaatcttat ttattgtaca tacccggggt aggggtgggg tggagaggga
     7081 aggcgagaag actccccttg tcctgcccct cctgttcctt ttctacagcg atctgtctcc
     7141 ccggccctcc gccctgcttc cctttgtctt ctcaatgtgg ttctattttt taatgcctct
     7201 ctctgccccg gccctgctcc ctcctgccct cttccctcct ctccttgacc tcctgctctt
     7261 cttactcggc gctgtacaac tcaccttgta tacactgtgt acacacaacc agccaaacga
     7321 aacccaacag caacacttta ccagcaggct ggagtgctct gtctgcggcg gtgggtgggc
     7381 ctgggcagtg ggagcaagga ttggcaaaga aacccggatg aagcccgctt aggtatagag
     7441 cccagggacc gtgtatgtgt gaccccgaaa tctaatgacc tcaaacaag
//
