LOCUS       XM_006246436            1847 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphoribosyl pyrophosphate
            synthetase-associated protein 2 (Prpsap2), transcript variant X4,
            mRNA.
ACCESSION   XM_006246436
VERSION     XM_006246436.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006246436.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006246436.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1847
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1847
                     /gene="Prpsap2"
                     /gene_synonym="Pap41"
                     /note="phosphoribosyl pyrophosphate synthetase-associated
                     protein 2; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 30 ESTs, 4 long SRA reads,
                     26 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 146 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:117272"
                     /db_xref="RGD:620207"
     CDS             249..1358
                     /gene="Prpsap2"
                     /gene_synonym="Pap41"
                     /codon_start=1
                     /product="phosphoribosyl pyrophosphate synthase-associated
                     protein 2 isoform X1"
                     /protein_id="XP_006246498.1"
                     /db_xref="GeneID:117272"
                     /db_xref="RGD:620207"
                     /translation="MFCVAPPELETKMNITKGGLVLFSANSNSSCMELSKKIAERLGV
                     EMGKVQVYQEPNRETRVQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAK
                     SIIGVIPYFPYSKQCKMRKRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPV
                     DNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAE
                     SDLVDGRHSPPMVRSVAAIHPSLEIPMLIPKEKPPITVVGDVGGRIAIIVDDIIDDVD
                     SFLAAAETLKERGAYKIFVMATHGLLSSDAPRLIEESAIDEVVVTNTIPHEIQKLQCP
                     KIKTVDISMILSEAIRRIHNGESMSYLFRNIGLDD"
ORIGIN      
        1 ctcgatggcc tcgcccactc cagtcagttg ccctcaggcc ccgcccccag cctcgcactc
       61 tcgcacgact ttctcgcgct tggagtcgcc attttgctga agaataacag agaggttaac
      121 agaatacagg ataacaggag aataacagga ggttgtccat aattgacttt aagcagcaaa
      181 cagtaaaaca ctgagctctt cagctccgcc tttcttgctc ttagaattgg aacgccaaga
      241 aggttttgat gttttgtgtg gcgcctcctg aattagaaac caagatgaac ataaccaaag
      301 gaggcctcgt gttgttttca gcaaattcca attcatcatg tatggagctt tcaaagaaaa
      361 ttgcagagcg gctgggggtg gagatgggca aagtgcaggt ttaccaggaa cctaacagag
      421 aaacacgagt tcaaatccag gagtctgtga gagggaaaga tgtatttatc attcagaccg
      481 tctcgaagga cgtgaacacc accatcatgg agctcctgat tatggtatat gcatgtaaga
      541 cctcttgtgc caagagcatc attggagtga tcccctactt tccttatagc aagcagtgca
      601 agatgagaaa aaggggctct attgtctcaa aattgctggc ttctatgatg tgcaaagctg
      661 gtctgactca tcttatcact atggatttac accagaagga aatccagggc ttcttcaata
      721 ttccagtgga taatttaaga gcctcccctt tcctgttaca gtatattcaa gaagagatcc
      781 cagattatag gaatgcagtc atcgtggcca agtctccagc ctcagccaag agggcacaat
      841 cttttgcaga gcgtctacgc ctggggatcg cagtgatcca tggagaagca caggatgctg
      901 agtctgactt ggtggatggc cggcactccc caccaatggt caggagtgta gctgccatcc
      961 accccagcct ggagatccca atgctgattc ctaaagaaaa gcccccaatc acagttgttg
     1021 gtgatgttgg aggaagaatt gccatcatcg tggatgacat tattgatgat gtggacagct
     1081 ttcttgctgc agcagagacc ctaaaggaaa gaggtgcata taagatcttt gtgatggcaa
     1141 ctcacggctt gttatcctct gatgctcccc ggctgattga agagtctgcc attgatgagg
     1201 tggtggtcac taacacgatc ccacatgaaa tccagaagtt gcagtgcccc aagatcaaga
     1261 ctgtggacat cagcatgatc ctctcagaag ccatccgccg aattcacaac ggggagtcca
     1321 tgtcctacct tttcagaaac ataggcttag atgactgaac agttctccta tggcagaact
     1381 cccacaggtc aagtgggagg cccagcatat atgctggaag gcccatgccc agctagatac
     1441 ttgaccctcc cttcctgaca tcttcctgat tgattcctgt gaaggtacaa ggaccagctt
     1501 tcttaatgtt ggtttaggtt tttgtgagtt tgggggataa tttttataac agaaagacct
     1561 cctcttaaat aaaagaagtt aaaacctgat tgtttttagt gtaaccattt taaataatac
     1621 acttgagtga gatttttaag ctcagccttt ttttaaagtt gcttgatcca actgttcaaa
     1681 aagttaagta aaatgatctg ctgtctactg cctacagtca gaaaggtact gttggttcca
     1741 atacatgatc tttttagaaa cgcttttata aagggcatat agtgtatgtg gctgtattta
     1801 ttttctgcaa ctaaacaaag aataaaacct catgtttgat ttttaaa
//
