LOCUS       XM_039078429            1925 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus peripherin (Prph), transcript variant
            X5, mRNA.
ACCESSION   XM_039078429
VERSION     XM_039078429.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1925
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1925
                     /gene="Prph"
                     /gene_synonym="Perf; Prph1"
                     /note="peripherin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 67 ESTs, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 95 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:24688"
                     /db_xref="RGD:3414"
     CDS             236..1621
                     /gene="Prph"
                     /gene_synonym="Perf; Prph1"
                     /codon_start=1
                     /product="peripherin isoform X5"
                     /protein_id="XP_038934357.1"
                     /db_xref="GeneID:24688"
                     /db_xref="RGD:3414"
                     /translation="MPSSASMSHHSSGLRSSISSTSYRRTFGPPPSLSPGAFSYSSSS
                     RFSSSRLLGSGSPSSSARLGSFRAPRAGALRLPSERLDFSMAEALNQEFLATRSNEKQ
                     ELQELNDRFANFIEKVRFLEQQNAALRGELSQARGQEPARADQLCQQELRELRRELEL
                     LGRERDRVQVERDGLAEDLGALKQRLEEETRKREDAEHNLVLFRKDVDDATLSRLELE
                     RKIESLMDEIEFLKKLHEEELRDLQVSVESQQVQQVEVEATVKPELTAALRDIRAQYE
                     NIAAKNLQEAEEWYKSKYADLSDAANRNHEALRQAKQEMNESRRQIQSLTCEVDGLRG
                     TNEALLRQLRELEEQFALEAGGYQAGAARLEEELRQLKEEMARHLREYQELLNVKMAL
                     DIEIATYRKLLEGEESRLKTTVPEVEPPQDSHSRKMVLIRTIETRDGEVVTESQKEQH
                     SELDKSSIHSY"
ORIGIN      
        1 aacaaggggg aatcaagcag gcagggcgcc agcaaccagg agagggaagg ggtggtgtcg
       61 ccgctctgca gggtggggca tccccctccc cacacagccc aaggctgaag tcaggccagt
      121 gggaggagct gtcgtgcccc cccagtaaac ccccccccca taccgcaggg ctataaagcc
      181 gccccgcatc ggtctgcagc tccttcccgc ccggcctagt tctgccaagc gctgaatgcc
      241 atcttccgcc agcatgagcc atcactcgtc gggcctccgg tccagcatca gctccacctc
      301 ataccgccgg accttcgggc caccgccctc actgtccccc ggggctttct cctactcatc
      361 cagctctcgc ttctccagca gccgcctgct gggctcgggg tccccgagct cctcggcgcg
      421 gctgggcagc ttccgtgccc ctcgagcggg ggccctgcgc ttgccctcgg agcgcctcga
      481 cttctccatg gccgaggccc tcaaccagga gttcctggcc actcggagca acgagaagca
      541 agagctacag gagctcaacg accgcttcgc caacttcatc gagaaggtgc gcttcctgga
      601 gcagcagaac gcagccctgc gcggggagct gagccaggcg cggggccagg agccggcgcg
      661 cgccgaccag ctgtgccagc aggagctgcg cgagctgcgg cgcgaactgg agctgctggg
      721 ccgggagcgc gaccgggtgc aggtggagcg cgacgggctg gcggaggacc tgggggcgct
      781 caagcagagg ttagaagaag aaactcgcaa gcgggaggat gcggagcaca acctggtgct
      841 cttccgtaag gacgtggacg acgccacgct gtcccgccta gaactagagc gcaagatcga
      901 atctctgatg gacgaaattg agttcctcaa gaagctacac gaagaggagc ttcgagacct
      961 gcaggtgagc gtggagagcc agcaggtgca gcaggtggag gtagaggcaa cagtgaagcc
     1021 agagctgacc gcggcgctga gggacatccg tgcacagtat gagaacatcg cggcgaagaa
     1081 tctgcaggag gcagaggagt ggtataagtc aaaatacgct gacctgtccg atgctgccaa
     1141 ccgcaaccat gaggccctac gtcaggccaa gcaggagatg aacgagtccc gacgtcagat
     1201 ccagagtctg acgtgcgaag tggacgggct tcgtggcacg aacgaggcac tgctcagaca
     1261 gttgcgggag ctggaggagc agttcgccct ggaggctgga gggtaccaag caggcgcagc
     1321 acggctggag gaagagcttc gacagctgaa ggaagagatg gcgaggcacc tgcgagagta
     1381 ccaggagctc ctcaacgtca agatggccct ggacatcgag atagccacct acaggaagct
     1441 actggaaggg gaagagagcc gtttaaagac gactgtgcct gaggtggagc ctccccagga
     1501 cagccacagc cggaagatgg ttctgatcag gactatcgag actcgggatg gggaggtggt
     1561 gacagagtct cagaaggagc agcacagtga actggacaag tcttctattc acagctactg
     1621 aggcctcagc tggatctctg aggctgactg aagcccgttc ctaagctcga accctccctt
     1681 gcaccagtct gcaaccagtc ctgctcagca tgtggcaccc tcctagccga gctccagccc
     1741 gatcctgagg ctggacctct ccctgatgca ttgatgtgac ccatagcttt cctgtccttg
     1801 gaagaggcga tgaagaaacc caggacagca gatctgctca agaatgaccc catggactgt
     1861 ggggtgggcc agagtgtgag attcactctg agtcaaataa aatcgctacc gagagaaact
     1921 ctgta
//
