LOCUS       NM_001134583            3133 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus pre-mRNA processing factor 40 homolog B
            (Prpf40b), mRNA.
ACCESSION   NM_001134583 XM_001063587 XM_343330
VERSION     NM_001134583.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3133)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474035.2.
            
            On or before Sep 4, 2008 this sequence version replaced
            XM_343330.3, XM_001063587.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132263,
                              SAMD00132273 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..3133
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q36"
     gene            1..3133
                     /gene="Prpf40b"
                     /gene_synonym="RGD1565411"
                     /note="pre-mRNA processing factor 40 homolog B"
                     /db_xref="GeneID:363000"
                     /db_xref="RGD:1565411"
     exon            1..87
                     /gene="Prpf40b"
                     /gene_synonym="RGD1565411"
                     /inference="alignment:Splign:2.1.0"
     CDS             70..2673
                     /gene="Prpf40b"
                     /gene_synonym="RGD1565411"
                     /note="PRP40 pre-mRNA processing factor 40 homolog B;
                     PRP40 homolog, pre-mRNA processing factor B"
                     /codon_start=1
                     /product="pre-mRNA-processing factor 40 homolog B"
                     /protein_id="NP_001128055.1"
                     /db_xref="GeneID:363000"
                     /db_xref="RGD:1565411"
                     /translation="MMPPPFMPPPGLPPPFPPMGLPPMSQRPPAIPPMPPGILPPMLP
                     PMGAPPPLTQIPGMVPPMMPGMLMPAVPVTAATAPGADTASSAVPGTGPPRALWSEHV
                     APDGRIYYYNADDKQSVWEKPSALKSKAELLLSQCPWKEYKSDTGKPYYYNNQSQESR
                     WTRPKDLDDLEALVKQESAGKQQTQQLQTLQPQPPQPDPPPIPPGPIPVPMALLEPEP
                     GRSEDCDVLEAAQPLEQGFLQREEGPSSSTGQHRLPQEEEEAKPEPERSGLSWSNREK
                     AKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEK
                     EEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGDLEVWAVVPERDRKEVYDDV
                     LFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDQQL
                     QNMDKEDALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQTFLDELHETGQL
                     HSMSTWMELYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKD
                     RGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRM
                     RRREAAFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVLE
                     TECQHLHTKGRKHGRKGRKHHRKRSHTPSGSESDEEELPPPSLRPPKRRRRNPSESGS
                     EPSSSLDSVESGGAALGGPGSPSSHLLLGSDHGLRKTKKPKKKTKKRRHKSTSPDSET
                     DPEDKAGKESEDREQEQDREPRQAELPNRSPGFGIKKEKTGWDTSESELSEGELERRR
                     RTLLQQLDDHQ"
     exon            88..231
                     /gene="Prpf40b"
                     /gene_synonym="RGD1565411"
                     /inference="alignment:Splign:2.1.0"
     exon            232..297
                     /gene="Prpf40b"
                     /gene_synonym="RGD1565411"
                     /inference="alignment:Splign:2.1.0"
     exon            298..325
                     /gene="Prpf40b"
                     /gene_synonym="RGD1565411"
                     /inference="alignment:Splign:2.1.0"
     exon            326..351
                     /gene="Prpf40b"
                     /gene_synonym="RGD1565411"
                     /inference="alignment:Splign:2.1.0"
     exon            352..462
                     /gene="Prpf40b"
                     /gene_synonym="RGD1565411"
                     /inference="alignment:Splign:2.1.0"
     exon            463..583
                     /gene="Prpf40b"
                     /gene_synonym="RGD1565411"
                     /inference="alignment:Splign:2.1.0"
     exon            584..608
                     /gene="Prpf40b"
                     /gene_synonym="RGD1565411"
                     /inference="alignment:Splign:2.1.0"
     exon            609..806
                     /gene="Prpf40b"
                     /gene_synonym="RGD1565411"
                     /inference="alignment:Splign:2.1.0"
     exon            807..933
                     /gene="Prpf40b"
                     /gene_synonym="RGD1565411"
                     /inference="alignment:Splign:2.1.0"
     exon            934..998
                     /gene="Prpf40b"
                     /gene_synonym="RGD1565411"
                     /inference="alignment:Splign:2.1.0"
     exon            999..1163
                     /gene="Prpf40b"
                     /gene_synonym="RGD1565411"
                     /inference="alignment:Splign:2.1.0"
     exon            1164..1272
                     /gene="Prpf40b"
                     /gene_synonym="RGD1565411"
                     /inference="alignment:Splign:2.1.0"
     exon            1273..1423
                     /gene="Prpf40b"
                     /gene_synonym="RGD1565411"
                     /inference="alignment:Splign:2.1.0"
     exon            1424..1557
                     /gene="Prpf40b"
                     /gene_synonym="RGD1565411"
                     /inference="alignment:Splign:2.1.0"
     exon            1558..1672
                     /gene="Prpf40b"
                     /gene_synonym="RGD1565411"
                     /inference="alignment:Splign:2.1.0"
     exon            1673..1764
                     /gene="Prpf40b"
                     /gene_synonym="RGD1565411"
                     /inference="alignment:Splign:2.1.0"
     exon            1765..1881
                     /gene="Prpf40b"
                     /gene_synonym="RGD1565411"
                     /inference="alignment:Splign:2.1.0"
     exon            1882..2019
                     /gene="Prpf40b"
                     /gene_synonym="RGD1565411"
                     /inference="alignment:Splign:2.1.0"
     exon            2020..2115
                     /gene="Prpf40b"
                     /gene_synonym="RGD1565411"
                     /inference="alignment:Splign:2.1.0"
     exon            2116..2202
                     /gene="Prpf40b"
                     /gene_synonym="RGD1565411"
                     /inference="alignment:Splign:2.1.0"
     exon            2203..2380
                     /gene="Prpf40b"
                     /gene_synonym="RGD1565411"
                     /inference="alignment:Splign:2.1.0"
     exon            2381..2442
                     /gene="Prpf40b"
                     /gene_synonym="RGD1565411"
                     /inference="alignment:Splign:2.1.0"
     exon            2443..2580
                     /gene="Prpf40b"
                     /gene_synonym="RGD1565411"
                     /inference="alignment:Splign:2.1.0"
     exon            2581..3133
                     /gene="Prpf40b"
                     /gene_synonym="RGD1565411"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 caacagtcgg ttcccgattc tggtccccgg cccccagcag cgcctgcccc cttcccaccg
       61 gggcccccca tgatgccacc acccttcatg ccccctccag ggctcccacc tccttttcct
      121 ccgatggggc tcccccctat gagtcagaga cctccagcca tcccccccat gccacctggc
      181 atattgcccc caatgcttcc accaatgggg gcaccgcctc cacttacaca gataccagga
      241 atggtccctc cgatgatgcc ggggatgctg atgccagccg tgcctgtcac tgcagcgacg
      301 gctccgggtg cggacaccgc cagctctgct gtgcctggca caggccctcc gagggcctta
      361 tggagtgaac acgtggcccc tgacgggcgc atctactact acaatgcaga tgataagcaa
      421 tccgtgtggg agaagcccag cgcactcaag tctaaagccg agctgctact gtcccagtgt
      481 ccctggaaag agtataaatc agacacagga aagccttact actacaacaa ccagagtcag
      541 gagtcccgtt ggacccgacc caaggacctg gatgacctgg aagccctagt caaacaagag
      601 tctgcaggaa aacagcagac ccagcaacta cagacactac agccacaacc acctcagcct
      661 gaccctccac ctatacctcc gggtcccatc ccagtgccca tggccctcct ggaacctgaa
      721 ccaggtcgaa gtgaagactg tgatgtgctg gaggctgccc aacccttgga gcagggcttc
      781 ctgcagcggg aggagggccc cagcagttct actggacagc atcggctacc acaggaagag
      841 gaggaagcta agccagaacc agagagatcg ggcctcagtt ggagcaaccg ggagaaggca
      901 aagcaggcat tcaaagagct gctaagggac aaggctgtcc cttccaatgc ttcctgggaa
      961 caggccatga agatggtagt cactgaccca cgttacagtg ccttgcccaa actgagtgag
     1021 aagaagcagg cgtttaatgc ttataaggct cagcgggaga aagaggagaa agaggaggcc
     1081 cggctgagag ccaaggaggc caagcagact ctgcagcatt tcctggagca gcatgaacgc
     1141 atgacctcca ccacccgcta ccggcgggca gaacagactt ttggggacct ggaggtctgg
     1201 gctgtggtcc ctgagaggga tagaaaagaa gtttatgatg atgtcctctt cttcctggcc
     1261 aagaaggaga aggaacaagc caagcagctc cggcgtcgaa acatccaagc cctgaagagc
     1321 atcctggatg ggatgagtag tgtcaacttc caaaccacat ggtcccaggc ccagcagtac
     1381 ctcatggata accccagctt tgctcaggac cagcagctgc agaacatgga caaagaagat
     1441 gcactcatct gctttgagga gcacatccga gctttggaga gagaggagga ggaagagcgg
     1501 gaacgcgccc ggcttcggga acggcgccag cagcggaaga atcgggaggc ttttcagacc
     1561 ttcctggacg agctgcatga gacagggcag ctgcactcca tgtccacctg gatggagctg
     1621 tacccagcag tcagcaccga tgttcgcttt gccaacatgc tgggccagcc gggctcgact
     1681 cctctggact tgttcaagtt ctatgtggag gagttgaagg ctcggttcca cgatgagaag
     1741 aaaatcataa aggatattct taaggaccgg ggcttctgtg tggaggtgaa cacagccttt
     1801 gaggacttcg cccacgtcat aagctttgac aagagggctg ctgcgctgga cgcaggcaac
     1861 atcaagctga ccttcaacag tctgctggaa aaagcagagg cacgggagag ggaacgggaa
     1921 aaggaggagg cccgaaggat gcggcgcaga gaagctgcct ttcgaagcat gctgaggcag
     1981 gccgtgcctg ctctggagct gggcactgcc tgggaagagg tccgtgagcg ctttgtgtgc
     2041 gactcagcct ttgagcagat caccctggag tcggagcgga tccggctctt tcgagagttc
     2101 ctgcaggtgc tggagactga atgccagcac ctccacacca aaggccgaaa gcatggcaga
     2161 aagggcagga aacaccatcg caagcgttcg cacaccccct caggctctga gtcagatgaa
     2221 gaggagctgc ccccaccatc cctccggccc cccaagcgga ggcggcggaa cccttcagaa
     2281 tctggctctg agccttcctc ctcacttgat tcagttgaaa gtgggggtgc tgcccttgga
     2341 ggaccaggct ccccatcttc ccaccttctt cttgggtcag atcatggtct tcggaaaacc
     2401 aagaaaccaa aaaagaaaac taagaaaaga agacacaagt cgaccagtcc ggacagtgag
     2461 acggaccccg aagacaaagc cggtaaggag agtgaagaca gagaacagga acaggacagg
     2521 gaaccccggc aggcagagct ccctaaccgt tccccaggct tcggaatcaa gaaggagaag
     2581 acaggctggg acacatcgga aagcgagctg agtgaggggg agctggagag gcgaaggcgg
     2641 acactcctac aacagctgga cgaccaccaa tgaccccacg agctactctg ccttgggact
     2701 tcgtgaggca atggcttcag ggtggcctca gcatctgcct cagactcctt cgtctgtctg
     2761 gtctgtgtcc actttcccta cagtagccca ccccaacgca ctgccgtgag cgcctctcga
     2821 ggttgctctt ggtgttcaag ggtcccctag ttctcagaca actagtgcag tccttgccct
     2881 cagccccaga ccagagacgg gcagtctata ccacatgggg tgggtgatgc cagtagatag
     2941 tgtgagaagg ggtctcccag gaaagagaca ggctggttgg acacagcctg ggtggccgag
     3001 ggcagggtcc tcaccctcta gcatcagtgc ctgctcttgc ctgacctggt cctggggctc
     3061 taccactgct tcctctccct tgggacccga tgtatgtgtt ctgttttgtt ttttaaataa
     3121 tatttataac atg
//
