LOCUS       NM_001108026            2879 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus pre-mRNA processing factor 39 (Prpf39), mRNA.
ACCESSION   NM_001108026 XM_001076405 XM_003750171 XM_003754180 XM_234238
VERSION     NM_001108026.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2879)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2879)
  AUTHORS   Bonaldo,M.F., Lennon,G. and Soares,M.B.
  TITLE     Normalization and subtraction: two approaches to facilitate gene
            discovery
  JOURNAL   Genome Res 6 (9), 791-806 (1996)
   PUBMED   8889548
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1 and BQ782205.1.
            
            On or before Aug 16, 2019 this sequence version replaced
            XM_003750171.2, XM_003754180.2, NM_001108026.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on orthologous alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.1682193.1,
                                           SRR26643299.27535.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-150               JAXUCZ010000006.1  88825240-88825389
            151-494             JAXUCZ010000006.1  88831466-88831809
            495-620             JAXUCZ010000006.1  88832246-88832371
            621-739             JAXUCZ010000006.1  88833020-88833138
            740-907             JAXUCZ010000006.1  88836122-88836289
            908-1073            JAXUCZ010000006.1  88841418-88841583
            1074-1181           JAXUCZ010000006.1  88842097-88842204
            1182-1346           JAXUCZ010000006.1  88843423-88843587
            1347-1473           JAXUCZ010000006.1  88843906-88844032
            1474-1742           JAXUCZ010000006.1  88844526-88844794
            1743-1927           JAXUCZ010000006.1  88845729-88845913
            1928-2002           JAXUCZ010000006.1  88847934-88848008
            2003-2117           JAXUCZ010000006.1  88849065-88849179
            2118-2861           JAXUCZ010000006.1  88849334-88850077
            2862-2879           BQ782205.1         1-18                c
FEATURES             Location/Qualifiers
     source          1..2879
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q24"
     gene            1..2879
                     /gene="Prpf39"
                     /note="pre-mRNA processing factor 39"
                     /db_xref="GeneID:314171"
                     /db_xref="RGD:1308702"
     exon            1..150
                     /gene="Prpf39"
                     /inference="alignment:Splign:2.1.0"
     exon            151..494
                     /gene="Prpf39"
                     /inference="alignment:Splign:2.1.0"
     CDS             180..2174
                     /gene="Prpf39"
                     /note="PRP39 pre-mRNA processing factor 39 homolog"
                     /codon_start=1
                     /product="pre-mRNA-processing factor 39"
                     /protein_id="NP_001101496.2"
                     /db_xref="GeneID:314171"
                     /db_xref="RGD:1308702"
                     /translation="MQNSHMDEYRNSDNGSTGNSSEVVIEHPDFSTEIMNVTEMEQSP
                     DASPSVRVSTEENEMANAVDLPVTETEGNFPPEFEKFWKTVETNPQDFTGWVYLLQYV
                     EQENHLMAARKAFDKFFIHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSV
                     DLWIHYINFLKETLDPGDPETNSTIRGTFEHAVLAAGTDFRSDKLWEMYINWENEQGN
                     LREVTAVYDRILGIPTQLYSHHFQRFKEHVQNNLPRDLLTGEQFIQLRRELASVNGHN
                     GDDGPPGDDLPSGIEDITDPAKLITEIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEG
                     IKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAK
                     YMENHSIEGVRHVFSRACTVHLPKKPMAHMLWAAFEEQQGNINEARIILRTFEECVLG
                     LAMVRLRRVSLERRHGNMEEAEHLLQDAIRNAKSNNESSFYAIKLARHLFKIQKNLPK
                     SRKVLLEAIEKDKENTKLYLNLLEMEYSCDLKQNEENILNCFDKAIHGSLPIKMRITF
                     SQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQDTLKRKAENGSEEPEEKKAHTEDVSS
                     AQIIDGDLQANQAAYNYSAWYQYNYQNPWNYGQYYPPPPT"
     exon            495..620
                     /gene="Prpf39"
                     /inference="alignment:Splign:2.1.0"
     exon            621..739
                     /gene="Prpf39"
                     /inference="alignment:Splign:2.1.0"
     exon            740..907
                     /gene="Prpf39"
                     /inference="alignment:Splign:2.1.0"
     exon            908..1073
                     /gene="Prpf39"
                     /inference="alignment:Splign:2.1.0"
     exon            1074..1181
                     /gene="Prpf39"
                     /inference="alignment:Splign:2.1.0"
     exon            1182..1346
                     /gene="Prpf39"
                     /inference="alignment:Splign:2.1.0"
     exon            1347..1473
                     /gene="Prpf39"
                     /inference="alignment:Splign:2.1.0"
     exon            1474..1742
                     /gene="Prpf39"
                     /inference="alignment:Splign:2.1.0"
     exon            1743..1927
                     /gene="Prpf39"
                     /inference="alignment:Splign:2.1.0"
     exon            1928..2002
                     /gene="Prpf39"
                     /inference="alignment:Splign:2.1.0"
     exon            2003..2117
                     /gene="Prpf39"
                     /inference="alignment:Splign:2.1.0"
     exon            2118..2862
                     /gene="Prpf39"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtggtcccga agaggcggcg gcggcggcgg tggcagcggc gcttgtggtg gtggctgcgg
       61 tagctgagtg aactgaggca ttggcaggct catctttggc gatcttggcc ctggcttcgg
      121 ctcatggcac cgagaagcat ccatcgtaag atcattaact gaagaccaaa taaatagcta
      181 tgcaaaattc ccacatggat gagtacagga actctgataa tggcagcaca ggcaacagtt
      241 cagaggtagt gatagagcat ccagatttta gtactgagat tatgaacgtt acggagatgg
      301 agcagtcgcc tgatgcctct cccagcgtac gtgtatctac agaagaaaac gaaatggcaa
      361 atgctgtgga ccttccagtg acagaaacag aaggaaactt ccctccagag tttgaaaaat
      421 tttggaaaac agtagaaacg aatcctcagg attttacagg atgggtatat ttgcttcagt
      481 atgtagaaca ggagaatcac ttgatggctg ccagaaaagc atttgacaaa tttttcatac
      541 attacccgta ttgctatggt tactggaaaa agtatgcaga ccttgaaaag cgacatgaca
      601 acattaaaca atcagatgag gtttatcgac gggggcttca ggcaatacct cttagtgttg
      661 atctttggat acattatata aacttcttaa aagaaacatt ggaccctggt gatcctgaga
      721 caaacagtac aataagagga acttttgagc atgctgttct agctgcagga acggattttc
      781 gatctgacaa attatgggaa atgtatataa actgggagaa tgaacaggga aatctgagag
      841 aagttacagc tgtatacgat cgtattcttg gtattccaac ccagctgtac agtcatcatt
      901 ttcagagatt taaagaacat gtgcaaaata acttgcctag agatctttta actggtgaac
      961 agtttattca gttgagaagg gaattagctt ctgtaaatgg acacaatggt gatgacggac
     1021 ctcctggtga tgaccttcca tcaggaattg aagacataac tgatccagca aagctaatta
     1081 ctgaaataga aaacatgaga catagaatca ttgaaattca tcaagaaatg tttaattata
     1141 atgagcatga agttagtaag aggtggacat ttgaagaagg tattaaaaga ccttattttc
     1201 atgtgaaacc actggaaaag gctcagctaa aaaactggaa agaatactta gaatttgaaa
     1261 ttgaaaatgg gactcatgaa agagtcgtgg ttctctttga aagatgtgtc atatcttgtg
     1321 ccctctatga ggagttttgg attaagtatg ccaagtacat ggaaaaccac agcattgaag
     1381 gagtgaggca tgtcttcagc agagcctgta ctgttcatct cccaaagaag cccatggcgc
     1441 acatgctgtg ggcagctttt gaggaacaac aggggaatat taatgaagcc aggattatct
     1501 tgagaacgtt tgaagaatgt gttctaggat tggcaatggt tcgattgcga agagttagtt
     1561 tagaacgacg gcatggaaat atggaagaag ctgaacattt gcttcaagac gctataagga
     1621 atgccaaatc aaataatgag tcatcatttt atgctatcaa actagcccga catcttttca
     1681 aaatacagaa aaaccttcca aaatcaagaa aggtactttt ggaagcaatc gaaaaagata
     1741 aggaaaacac aaagttatac ctcaatttac ttgaaatgga atacagttgt gacctcaagc
     1801 aaaatgaaga aaatatcctc aattgctttg acaaagccat acatggttcg ttgcctatta
     1861 aaatgagaat tacgttttct caaagaaaag tggaattcct tgaagatttt ggctcagatg
     1921 ttaataagct tctgaatgca tatgatgaac atcaaacact tctaaaagaa caggacactt
     1981 taaaaaggaa agctgaaaat ggctcagaag aaccagaaga aaagaaagca cacacagaag
     2041 atgtatcatc agcacagatc attgatgggg atttacaggc aaatcaagct gcatataatt
     2101 acagtgcctg gtatcagtac aattatcaga atccctggaa ttacggacag tattaccctc
     2161 cacctccaac ctgaagggaa cacgtaaatt tcagatggct tatataagac aatgtggaac
     2221 tatttttttt gaaggatgta aaacatagta taagcttgtt gtatttgata atttgtcttc
     2281 ccagtttctg tgtaacattt attttattta gttaatagca ggaaatgtca attaatagtg
     2341 tatcatagaa attttcctac catttttaaa atttactttt tattgaagaa ctattttttt
     2401 tatttttatt ttttatttta tcgtatcttt ttgcattaaa tggtctagaa ttcttttgca
     2461 gctcatgcag gagatttgta gccttaactg tagggggaaa actgactgta aatcatgtca
     2521 gttaaaaaag atttttttgg ggaaaaaaaa gggctggtta gtgagaatct tgcctcctat
     2581 aaaaacagac ttttaaaaaa ttgactttta accttaaacc ccaaagttat gtatatgttt
     2641 tgattatact ggggaatttg gttctaactg caggatagat gaactgttga catgcactgc
     2701 ctttgactag ataataatgg agaaagtgta atgtcagctt ccccttaaga aatgaaatat
     2761 caaagtatgt tttagagttt gtatctagaa tattcatgta aaacgcaagc tttcattttg
     2821 atcaaattta ccatttttgt aataaaaatt aagactcacg caaaaaaaaa aaaaaaaaa
//
