LOCUS       NM_001024305            2993 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Rattus norvegicus pre-mRNA processing factor 38B (Prpf38b), mRNA.
ACCESSION   NM_001024305 XM_575016
VERSION     NM_001024305.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2993)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CB720005.1, BC079264.1, DY314904.1 and BF283777.1.
            
            On Oct 11, 2007 this sequence version replaced NM_001024305.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ210223.1, BC079264.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760400, SAMEA5760475
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-51                CB720005.1         1-51
            52-1976             BC079264.1         1-1925
            1977-2416           DY314904.1         172-611
            2417-2993           BF283777.1         1-577               c
FEATURES             Location/Qualifiers
     source          1..2993
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..2993
                     /gene="Prpf38b"
                     /note="pre-mRNA processing factor 38B"
                     /db_xref="GeneID:499691"
                     /db_xref="RGD:1562940"
     exon            1..554
                     /gene="Prpf38b"
                     /inference="alignment:Splign:2.1.0"
     CDS             279..1907
                     /gene="Prpf38b"
                     /note="PRP38 pre-mRNA processing factor 38 domain
                     containing B"
                     /codon_start=1
                     /product="pre-mRNA-splicing factor 38B"
                     /protein_id="NP_001019476.1"
                     /db_xref="GeneID:499691"
                     /db_xref="RGD:1562940"
                     /translation="MANNSPALTGNSQPQHQAAAAVVQQQQQCGGGGATKPAVSGKQG
                     NVLPLWGNEKTMNLNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKG
                     SRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRAL
                     GFMYIRYTQPPTDLWDWFESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLF
                     PRIPVPVQKNIDQQIKTRPRKIKKDGKEGVEEIDRHIERRRSRSPRRSLSPRRSPRRS
                     RSRSHHRDGHGSSSFDRELEREKERQRLEREAKEREKERRRSRSLDRGLDRRRSRSRE
                     RHRSRSRSRDRKGDRRDRDREREKENERGRRRDRDYDKDRGNDRERDRERSRERSKEQ
                     RSRGEGEEKKHKEDKEDRRHRDDKKESKKKHSRSRSRERKHRSRSRSRNAGKRSRSRS
                     KDKASKHKNESKEKSNKRSRSGSQGRTGSVEKRKREHSPSREKSRKRSRSQDRSHKRD
                     HDSKDQSDRQDHQRSQSVEPESQEKEHKNKDETV"
     exon            555..623
                     /gene="Prpf38b"
                     /inference="alignment:Splign:2.1.0"
     exon            624..775
                     /gene="Prpf38b"
                     /inference="alignment:Splign:2.1.0"
     exon            776..836
                     /gene="Prpf38b"
                     /inference="alignment:Splign:2.1.0"
     exon            837..1060
                     /gene="Prpf38b"
                     /inference="alignment:Splign:2.1.0"
     exon            1061..2993
                     /gene="Prpf38b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccatcttgt tcccaggggc agttggcgga agagatcgag ctccttggct gcccgttctg
       61 ccttgcgtct ggacttctcg cagcctgtgt ttggtgtccg tcttgagccc ggggtccttg
      121 tgtcggcgtc ccagttgcag tccctcgctc ggctggggca caacgcggcg ggctctttgc
      181 cccgacggcc ttccatggag taggtccagg accgttgtcc cgaagagcgc gatcgagctt
      241 ggcccccctc ctcccgccct ccttcctgcc gcggcaacat ggctaacaac agccccgcgc
      301 tgaccggcaa ctcgcaaccg cagcaccagg cggctgcggc cgtggtccag cagcagcagc
      361 agtgtggcgg cggcggcgcc accaagccgg cggtgtcggg caagcagggc aatgtgctgc
      421 cgctgtgggg caatgagaag accatgaacc tcaaccccat gatcctcacc aacatcctgt
      481 cgtcgcctta cttcaaagtg cagctctacg agctcaagac ctaccacgag gtggtggacg
      541 agatctactt taaggtcacg catgttgagc catgggagaa ggggagcagg aaaactgctg
      601 gccagacggg gatgtgcgga ggggttcgag gcgttggaac aggaggcatt gtttctacgg
      661 cattttgcct cctgtacaaa ttatttaccc tgaagttaac tcgaaagcaa gtgatgggtc
      721 tcataacaca tacagactct ccatatatca gagcccttgg atttatgtat ataaggtata
      781 cacaaccccc tacagacctg tgggactggt tcgagtcctt ccttgatgat gaggaggacc
      841 tagatgtgaa agctggtgga ggctgtgtaa tgaccattgg agagatgctt cgttcttttc
      901 tcacaaagct cgagtggttt tctactttgt ttccaagaat tccagttcca gttcagaaga
      961 atattgatca gcagattaaa actcgaccta ggaaaatcaa gaaagacgga aaggaaggtg
     1021 ttgaggaaat agacagacat attgagagac ggcggtccag atctccaaga agatcactga
     1081 gcccacggag gtctccaaga agatcaagaa gcagaagtca tcaccgggac ggtcatggat
     1141 cttctagttt cgacagagaa ttagagagag agaaagaacg ccaacgacta gagcgggaag
     1201 ccaaagagag agagaaagaa aggcgaagat ctcgaagcct tgatcggggc ttagaccgca
     1261 ggcggagccg cagtcgggag aggcacagaa gtcgcagtcg cagtcgtgat aggaaagggg
     1321 atagaagaga cagggatcgg gaaagagaga aagaaaatga gagaggtcga agacgagacc
     1381 gggattatga taaggataga ggcaatgacc gagaaaggga cagggagaga tcaagagagc
     1441 gctccaagga gcaaagaagt aggggtgagg gagaagagaa aaagcacaaa gaagacaagg
     1501 aggacagacg acacagagat gacaaaaaag agtccaagaa aaaacacagc agaagtagaa
     1561 gcagagagag gaaacacaga agtaggagta gaagcagaaa tgcagggaag cggagcagga
     1621 gcaggagcaa ggacaaggca agcaaacata aaaacgaaag caaggagaag tcaaataaaa
     1681 gaagcagaag tggcagtcaa ggaagaactg gcagtgttga gaagagaaaa cgagaacaca
     1741 gccctagcag agagaagtct agaaagcgca gcaggagcca agaccgttcc cacaagagag
     1801 atcatgatag caaggaccag tcagacagac aggatcatca gagaagccag agtgtagagc
     1861 cagaaagcca agaaaaagaa cataaaaaca aagatgagac tgtgtgaaga ttttgtaaaa
     1921 ttggatcaca ttgaatccta taaatgttga ttaaattctg cttttccccc cccccagttg
     1981 aggttgtgca gtagttatgc actctgagct ccctgtaggc tgttttcttt tgtgtaggaa
     2041 gtgcctttgt aatcccattg agcattgatg tttccaccca gttgagttga cacataatgc
     2101 acagattgtt cttgcatttt tgtttgtttt taaaatgtac agtgtgtaca tacgtcctga
     2161 aaatgtttta attccttcgg catggttgcc atgttggtta aatttgtata aggcaataaa
     2221 ctgccactaa ttctattttt gttttgtagg tgtgagatta tggttgtgta ctgaagttag
     2281 catggctgtg cttttcataa tagaatgcta aaaactttgg gaatggatct tggatgtttg
     2341 ctttaggaga attatgtttt tcagtataca tgaaggcaac agttgtaggg ttaacattct
     2401 tgtccactgt atattacctt ggaagctctt gttaatatgt tattattctc cacagttaat
     2461 gttagaaaga atttataaga ggtttaaatt aggctgtgat ttgatcaaaa gtccttttag
     2521 cattctacct caaagggaca ctgttagtat gcctaaaatt tatttacttt ttacaatgtg
     2581 cttctccccc gccccttgaa ttctttctca gattttaaaa atactatatt aaaatgtgta
     2641 aagcctggca ttgtagcagc cctatactaa ccagtgctgg gagagggtgg ggcacatgag
     2701 tagagaagca ttcaagcctc aagcttccaa agcattttta taaatggaga atacttaaat
     2761 tatgaaacag cttgatatag tatccttttt taagaattca aaactttttt tattgataat
     2821 gaagattgct gtttgagttt ttaaacttaa tctaggacag aaatattaat agtaatgcag
     2881 tgctgcgtta tttaagacta tcagcaaatt atttgataga ttgttcttat gacttgtatt
     2941 ctgatttcag aaaaccatca tgagtgtgga ataaatactg gattaaatcc ttt
//
