LOCUS       XM_006248643            2181 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus proline dehydrogenase (Prodh),
            transcript variant X4, mRNA.
ACCESSION   XM_006248643
VERSION     XM_006248643.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006248643.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006248643.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2181
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2181
                     /gene="Prodh"
                     /gene_synonym="Prodh1"
                     /note="proline dehydrogenase; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 25 ESTs, 5 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     64 samples with support for all annotated introns"
                     /db_xref="GeneID:680409"
                     /db_xref="RGD:1590932"
     CDS             207..1823
                     /gene="Prodh"
                     /gene_synonym="Prodh1"
                     /codon_start=1
                     /product="proline dehydrogenase 1, mitochondrial isoform
                     X2"
                     /protein_id="XP_006248705.2"
                     /db_xref="GeneID:680409"
                     /db_xref="RGD:1590932"
                     /translation="MDLKWCLGSRVYFKAASPACVCPPFSVTRLFQVARKLLGQRMFE
                     RLMKMTFYGHFVAGEDQESIRPLIRHNKAFGVGFILDYGVEEDLSPEEAERKEMESCT
                     SEAERDGSGANKREKQYQVHPAFGDRRDGVISARTYFYASEAKCDNYMENLLQCIEAS
                     GGASDGGFSAIKLTALGRPQFLLQFSDVLTRWRQFFHQMAAEQGQAGRPAVDTKLEVA
                     VLQESIAKMGISSRAEIERWFTPETLGVSGTVDLLDWNSLIDSRTQLSRHLVVPNVQT
                     GQLEPLLSRFTEEEEQQMKRMLQRMDVLAKRAREAGVRLMIDAEQSYFQPAISRLTLE
                     MQRRFNVDKPFIFNTFQCYLKDAYDNVTIDMELSRREGWCFGAKLVRGAYMAQERARA
                     VEIGYEDPINPTYEATNAMYHRCLNYVLEELKHSTKAEVMVASHNEDTVSFTLCRMKE
                     LGLHPADGQVCFGQLLGMCDQISFPLGQAGFPVYKYVPYGPVMEVLPYLSRRALENSS
                     IMKGAQRERQLLWQELCRRLRTGSLFHHPA"
ORIGIN      
        1 tgtgcggccg cctgtgccag ccgtggactt caccaacaca caggaggcgt accgcagccg
       61 tcgaagctgg gaactggcgc gcaacctgct agtgctgcgg ctgtgtgcgt cgccggtgct
      121 gctagcgcac catgagcagt gaaaataggt gtttctatta ctgggacaaa tttgtgtcac
      181 ctggatagga agatagtgac ttcgagatgg atttgaagtg gtgtcttggc tctagagtct
      241 actttaaagc tgccagccct gcctgtgtgt gtccaccatt ctcagtgacc aggttgttcc
      301 aagttgccag gaagcttctg gggcagagga tgttcgagag actgatgaag atgaccttct
      361 acggccattt cgtggctggc gaggaccagg agtctatcag gcctctgatt cggcacaaca
      421 aagcctttgg tgttggcttt atcctggact atggtgtgga ggaagatctg agccccgagg
      481 aggcggagcg caaagaaatg gagtcatgca cctctgaagc tgaaagagat ggcagtggag
      541 caaataagag ggagaagcag tatcaggtcc accccgcctt cggagaccgc agagatggcg
      601 tcatcagtgc ccgcacttac ttctatgcca gcgaagccaa atgtgacaac tacatggaga
      661 acttactgca gtgcatcgag gcctcaggcg gagccagtga cggtggtttt tcagccatta
      721 agctcacggc actggggaga ccacagtttc tgctgcagtt ctcagacgtg ctgaccaggt
      781 ggagacagtt ttttcatcaa atggctgcag agcagggaca ggctgggcgt cctgctgtgg
      841 acacgaagct ggaggtggcg gtgctccagg agagcatcgc caagatgggc atctcgtcca
      901 gggctgagat cgagaggtgg ttcacaccag agacgctggg agtgtctggc actgtggacc
      961 tactggactg gaacagcctc attgacagca ggacccagct ctccaggcac ctggtggtcc
     1021 ccaatgtaca gactggccag ctggagcccc tgctgtcacg gttcactgag gaggaagagc
     1081 agcagatgaa gaggatgctg cagaggatgg atgtgctggc caagagagcg agagaggcag
     1141 gcgtgcggct gatgattgac gccgagcaga gctacttcca gccggccatc agccgcctga
     1201 ccctggagat gcagcgcagg ttcaatgtgg ataagccgtt catcttcaac acgttccagt
     1261 gctacctcaa ggatgcctat gacaatgtga ccatagatat ggaactgtct cgccgtgagg
     1321 gctggtgttt tggggccaag ctggtacgtg gtgcatacat ggcccaggag cgagccaggg
     1381 ctgtggagat cggctacgag gaccccatca accctacata tgaagccacc aatgccatgt
     1441 accacaggtg ccttaactat gttctggagg agctgaagca cagcacaaag gccgaggtga
     1501 tggtggcttc ccacaatgag gacaccgtga gctttacgtt gtgcaggatg aaggagttag
     1561 gcctgcatcc tgctgatggt caggtgtgct tcggacagct gctggggatg tgtgaccaaa
     1621 ttagcttccc actaggccag gcaggcttcc ctgtgtacaa gtatgtaccc tacgggcctg
     1681 tgatggaggt gctcccgtac ctgtcccgcc gtgccctgga gaacagcagc atcatgaagg
     1741 gtgctcagcg agagaggcag ctgctatggc aggagctctg caggcggctg cgcacaggca
     1801 gcctcttcca ccatccggcc tagtcactgc aggggccatg cctacctatt ccactcaact
     1861 tgttacctct gcggctccag gcagggctta gtccaacctg cccagacacg gttcaccttt
     1921 ttatgcccaa gctttcgggg tgctgaggta ggggctgcct tcctgcaccc ccaaggagca
     1981 gacactcaag aatggagtca gctagaaccc ctgggagctg cctcactaat cctctgagta
     2041 agcactgagc acctctgcaa gctgcagagc cctcatctag aactaacctt ctgccagggt
     2101 ctaacctatc ttccctgcac tgggcagagg acaggctggg aagcctgttt agtcaataaa
     2161 tcatcttgta gtcaagagtc a
//
