LOCUS       XM_006233011            4951 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus protein kinase AMP-activated
            non-catalytic subunit beta 2 (Prkab2), transcript variant X1, mRNA.
ACCESSION   XM_006233011
VERSION     XM_006233011.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006233011.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006233011.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4951
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4951
                     /gene="Prkab2"
                     /note="protein kinase AMP-activated non-catalytic subunit
                     beta 2; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 26 ESTs, 1 long SRA read,
                     9 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 125 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:64562"
                     /db_xref="RGD:620905"
     CDS             187..1002
                     /gene="Prkab2"
                     /codon_start=1
                     /product="5'-AMP-activated protein kinase subunit beta-2
                     isoform X1"
                     /protein_id="XP_006233073.1"
                     /db_xref="GeneID:64562"
                     /db_xref="RGD:620905"
                     /translation="MGNTTSERVSGERHGAKAARAEGGGHGPGKEHKIMVGSTDDPSV
                     FSLPDSKLPGDKEFVPWQQDLDDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKI
                     PLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFE
                     VFDALKLDSMESSETSCRDLSSSPPGPYGQEMYVFRSEERFKSPPILPPHLLQVILNK
                     DTNISCDPALLPEPNHVMLNHLYALSIKDSVMVLSATHRYKKKYVTTLLYKPI"
ORIGIN      
        1 gcagaggcgg taccgcgtcg ccggccttgt agccatttta ggaggaaacc cggttcgctg
       61 gcttggggcg cggcttcaat ttcaataact ttattggtct ccttgtacgc cgaacagccg
      121 gcgtgcgtgt agccacgcga gcccggagcg catcgccaga ggttgccccg gactcgagct
      181 gcagccatgg gaaacaccac cagtgagcgg gtgtccgggg agcgccacgg tgccaaggct
      241 gctcgagctg agggtggcgg ccatggcccc ggcaaggagc acaagatcat ggtgggaagc
      301 accgacgacc ccagcgtctt cagcctgccg gactccaagc tccctgggga caaagagttt
      361 gtaccctggc agcaggattt ggatgattct gtgaagccca cccagcaggc ccggcctact
      421 gttatccgct ggtctgaagg gggcaaggag gtcttcatct ctgggtcttt caacaattgg
      481 agcaccaaga tccctctgat taagagtcat aatgactttg ttgccatcct ggatcttccc
      541 gagggagagc accagtacaa gttctttgtg gatggacagt gggttcatga tccatcagag
      601 cctgtggtta ccagtcagct tggcacaatt aataatttga tccatgtcaa gaaatctgat
      661 tttgaagtat ttgatgcttt aaagttagat tctatggaaa gctccgagac atcatgtcga
      721 gacctgtcca gctcaccccc agggccttat ggtcaagaaa tgtatgtgtt tcgatctgag
      781 gagagattca aatccccacc catcctgccc cctcacctcc tccaagttat tcttaacaag
      841 gacactaata tttcatgtga cccagcctta cttcctgagc ccaatcatgt tatgctgaac
      901 catctctatg cgctgtccat taaggacagt gtgatggtcc ttagcgcaac ccatcgctac
      961 aagaagaagt acgtcaccac gctgctgtat aagcccatct gaaggagata tcactccttg
     1021 cctccaagga ttctggagaa gcatctccct tgcctttgaa ctgagctggc ctcctctgag
     1081 cctggcaggc tgtttgtttt gaggctgatg tgtgtgtcag agcctctggt aggagctctg
     1141 ctttgccttt gattgcagac gagagcttta tgagttcatg gagtttattt taagaaacac
     1201 aaaaccatat atatgcatat gagaggaagg ttaccagaag cctcctggcc cagctgtcca
     1261 cactctctct gcctgtgggt agttgccagg gcctgactgg gaagctgtgg ctgcaggaat
     1321 gggtgtaccg gaagcttctt tttctaaagt gagagaatag caaactctta ggatccttgt
     1381 tgggcagagg tcctggacca ctggtgtcca agggtcagag tgtgccaggc cactgcccta
     1441 cttagagctg cctcgtgcgg gtggctttcc ttgcatgggt tgattctgta tcccacactg
     1501 tgtgacacaa tccaccgtgg tttatatggc actagttgct ccacaagaac cctcctcatt
     1561 ttatgtaccc tgtggaatga cttccctcag atctcataca tgacccagta atgcaaaact
     1621 cactgggcga ggaacccttt tgaagagttt gtgggatgag cctcacctta gagcctgagg
     1681 tgccagggtc tcctttttag ctcagtgaag gcctaaccct gtgtgttgca gtttacttta
     1741 acatctagag aaaagaaatg cacaccgttg tgtctcggtt ggtcctgtgt attggctgtg
     1801 tgggcctgtc tccggttttc tttatcagag cactcagctt gtaggcaggc ttgcacttag
     1861 ggaaaccttc catatctttc atccctgaaa gtttttttat gtgcctacat ttttctttaa
     1921 ttaaaaaaaa agcatatcca tcaattttaa tgggctatta aagaaccttg ggccttgaca
     1981 gatggttctt aagattttct tctctagtct aggcagctct ccagccttgg gttaatgtgg
     2041 ccagccgtgt gcacctcgct gcccaagcac agctctagac acaagtccat gcgggctcac
     2101 tggatgctca cactggactt ccctaccttt aaagacatgt aaggcaaggg acactgccct
     2161 ggcgttcata accatgggtt agggtagggt actgctcttc acaccaaata ttaaccaagt
     2221 attttttttt cttttgcctc ttcgttttaa atgtgtctga tgagggagag gggtcactga
     2281 taaccactga atgagaagta ttccaaccta ctcaggagtc aaagagaaca ttctccagta
     2341 tctcgacact tccctttgac agataaatgc aagtcaaaca tcaagcactg tttgtggtcg
     2401 agagacttcc tgtctcctga gacgggccag tcacgtttga aagagacctt ccggtcagtt
     2461 cagttacctc ctggctttgc cacacgttgc tgggacagca atgctacagt cgtagcagta
     2521 gaagggaggg gaaagctgtg agacctctgc gagcacaagc atgggtagga agacgggatg
     2581 tttcgcaggg aatagtagag aagtaaatga gtcctggcag taagtgctgc ctcagccatc
     2641 gcaagccacc tcatttctgt ggagaaccct cgtggtccag tcagctttct gaataatgtg
     2701 ccattttgaa aaccaaagtc tcatcttggt ttttaatcaa cttaagactc ttcagtcaca
     2761 ctgggaggtt ttatttattt atttattttc tgttttttct cagtgctgat ttagaaacag
     2821 gccacctagg agggttcaaa gtcttgattg tttcacagag ggattgtcta tctgtacttc
     2881 ctgttaacag tgagagctgg ggtggtctgt gtgtttgtgt actcagtttc actccacagt
     2941 cgcagcagta gaagggaggg gaacactgtc tccagtctct cgggctgata gaggggtcag
     3001 tgctggtaac cttcagatcc ttctctggac atgaaggaga cagaagggct cgacagtgct
     3061 gtccctgccc tggcccctgg ccctggggag ctctgcccct gtcaccagga aacacttgtg
     3121 atggggcaga gggattactg cttttgtctt agttacttta agggacagct tgttttctag
     3181 agtaagaagt tgggttcaga attcagaaat aaatgaaggc aaaacatttt tcttttcccg
     3241 cctatgagaa ttttgcaggg tcacttggta gagtaaacca gcccataaga aggcctgtag
     3301 tgtagagcaa tggctctgag gaaaggaaag cagtgaatgg gccaaagggt gatagcaaga
     3361 aactggaggg tcggcgctgg aaatttcctc ttaaagagtt caagcagaca ggacctggat
     3421 ccttggattt tatttattgt acaaaaaact tagcagccca gaaactgttg tctttgtcct
     3481 gttgccctat tctctatttt tcctctgcat tctgtttgac ttcccttatc agtatgacag
     3541 gttcaccagg gtctcaaggt ggacgtgacc tagacagtgt gaagagctgt cgcgccatgg
     3601 ttattaatgc cctgtcaacc tagacctgag taggaattag ccaatgtagg ccacacccct
     3661 gaaggcacag ctagcttcaa gagccctggt ctcttgggtc tgaagtagaa aggaagattc
     3721 cccgtttcta agaggagccg tgtcccaccc acccctgtag gttctggttt cttgcagacc
     3781 tggtggacct tacgtaaacc ttttgaaaag tgtcactgtt acatgcatgc tgctagagtg
     3841 atgtgacttg aaagtgggaa acagggcttt taaatgtttg acctcaaaac aatatgcaat
     3901 agtccctgta tgtgtgggtg tgtatgtgca cgtgcacatg tgtgtatgtg atattcactc
     3961 tgtcctcaga gatactttgt cctcgtattc ttgtgacttg gggcttaaga gcagataaat
     4021 actttgttca tgtgtcatca ctaatcctca aagccacgtt cttgctgtct tctgtctgct
     4081 gcagactcca gttcctcatg aatatgagac ctggaagaag gaagggtctt tcaggactct
     4141 gggtcaggag tctgtctgac cttaagtgac agtcacaact ggagattgaa ggactgattt
     4201 cttcagtgaa cataagtgtt tggagtaaaa aagccaatta ttttttcaat tataggaaag
     4261 ggaaaaaaaa tcacaagtct cttgtaggat ccactgcctc tgggatttta aagtggatct
     4321 gtctcagctt gatttcttct caccattgct ttgaagtagc aagcttcatt caaaataaac
     4381 atgtttgtac ttccaacgtt aggtggactt gatttgaatt aagtgtggca cagaacattt
     4441 gcagtaagtt tgatgtgaaa tactaaatat tagggatttg taggtgttgg gctacatagt
     4501 caggcgacac ctagagtaag tgttatggca ggggttggcc atcttggatt cctctctgta
     4561 gagtaccttc cccagcgttt taggacagcc agacatcagc atcagtttgt cctaaattct
     4621 gtgctgggtg gcctatacga ggcgaatttg gatttggtgg gtattggttg tttacactgt
     4681 agcactttga gtttgtcatt tggcaggggt gacttaattt gaaggcagtt aagtaagtgt
     4741 gagtctctta aatggtgctg tttgtgacct ttgatggcgg cgtgcagagc tgcttcactg
     4801 attcacaacc ggacacaagt caagacttta aagcttctct ccacgcgtga ctcaccacca
     4861 gactctgcct gaaaactgta taatgtaaca cacaaaaatg tgggtttgtt tttccataaa
     4921 actttaataa aagcatcatg cagcaataaa a
//
