LOCUS       XM_039094880            2219 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus primase and DNA directed polymerase
            (Primpol), transcript variant X4, mRNA.
ACCESSION   XM_039094880
VERSION     XM_039094880.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039094880.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2219
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2219
                     /gene="Primpol"
                     /note="primase and DNA directed polymerase; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 4 ESTs, 10 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     15 samples with support for all annotated introns"
                     /db_xref="GeneID:361147"
                     /db_xref="RGD:1562119"
     CDS             245..1849
                     /gene="Primpol"
                     /codon_start=1
                     /product="DNA-directed primase/polymerase protein"
                     /protein_id="XP_038950808.1"
                     /db_xref="GeneID:361147"
                     /db_xref="RGD:1562119"
                     /translation="MMGKWESMVKQIEERASHYERKPLSSVYRPRLSKPEEPSSIWKI
                     FHRQNQAFNFVKSCKESVHVFALEHKMGNGQRIYLVTSYAQFWFYYKTRTTLLHCYEV
                     IPENAVCKLYFDLEFNKLANPGADGKEMVALLVQHVCEALQEIYSVHCSAEDVLNLDS
                     STEEKFSRHLIFQLHDVAFKDNTHVGNFVRKILQPALHLITKDDEDEITEAVGHEASC
                     FSVTPLKQEISEAWEKLALPKQCDPDLSFLVVKNHKGEKCLFVDLGVYTKNRNFRLYQ
                     SSKIGKRVSLEVAEDNRFIPKQSKDISEENQYFLSSLVSNVRFSDTLRILSCDPSQTK
                     RKRVEYSNSAGTSVEPIEGFQASPYPEVDRFVLSLVNKPDTEGGIRRWNYFFPEELLV
                     YDICKYRWCENIGRAHKSNNIMILVDLKNEVWYQKCHDPVCKAQNFKSTCFPLPTEVS
                     LLFLLKDEEDFTSGETDEDSNSLTKDFQNPPPCNLSAADWDDGDDACFLEATEDAEFA
                     DAADKSVLGSVDDIPDELIIEALQSS"
ORIGIN      
        1 ggggtttcaa gttctggttc ccgccatctc tgcctccacc atctgccgcc tccggccgac
       61 ttgcactgct tgaggtagct gacaccacta gtaactctag ctccagggga tccaagaaca
      121 cacgaccaca tccacacaaa tacacatggg tttctgctaa aattgaagac aaaggcatta
      181 atatagtagt gattgacaga aaggtctctg tggctgggtt cctgctctcc atgcttctga
      241 agcaatgatg gggaaatggg agtcaatggt gaagcagatt gaggagcggg catctcacta
      301 tgagaggaag ccactgtctt ccgtgtacag accaagactg tccaagccag aagaaccatc
      361 ctccatttgg aagatatttc atcgtcagaa tcaggctttt aattttgtta aaagctgtaa
      421 agagagtgtt cacgtatttg ctttggagca caaaatggga aatggacaac gtatttacct
      481 tgtaacatcc tatgctcaat tttggtttta ctataagacc cggacaaccc tcctgcactg
      541 ctatgaagtt attcctgaga acgctgtgtg caagctttat tttgatttgg aatttaacaa
      601 actggccaat ccaggagctg acgggaagga gatggttgca ctgcttgtac agcatgtctg
      661 tgaagcactg caggagattt acagtgttca ctgctcagct gaagatgttc tcaacctgga
      721 ttccagcact gaagaaaagt ttagccgaca cctaatattt cagctccatg atgtggcgtt
      781 taaagataac actcatgttg gtaattttgt gagaaaaatt ttgcaacctg ctcttcactt
      841 aatcaccaag gacgatgagg atgagatcac agaggcagtg ggccatgaag cctcctgttt
      901 ttctgttaca ccattaaaac aagagatttc agaggcctgg gagaagctgg cgttgcctaa
      961 gcagtgtgac cccgatcttt catttttagt tgtgaaaaat cacaaaggag aaaaatgtct
     1021 ctttgtggat ctaggagtgt atacaaaaaa cagaaacttt cgactatatc aatcatcaaa
     1081 aataggaaag cgtgtgtctt tggaggttgc agaagataac agatttattc caaaacagtc
     1141 aaaagatatt tctgaggaaa accagtattt cctgtcttcc ctggtgagca atgtcagatt
     1201 ctcagacact ttacgaattc tctcatgtga cccgtctcag accaaaagaa agcgggttga
     1261 atattctaac agtgctggca cttcagtgga acccattgaa ggcttccagg cctccccgta
     1321 ccctgaggtc gaccgctttg ttctttcttt ggtgaataaa cctgacactg aaggaggaat
     1381 tcggcgttgg aactactttt tcccagaaga attgctggtt tatgatatat gtaaatatcg
     1441 ctggtgtgaa aacattggaa gagcccacaa gagtaataat atcatgattc tggttgatct
     1501 gaaaaatgaa gtttggtatc agaaatgcca tgaccctgta tgtaaagcac aaaacttcaa
     1561 atctacctgt ttcccactac ccactgaagt aagtctcctg tttcttctga aagatgaaga
     1621 agatttcact tctggagaaa cagatgaaga cagcaactca ctaaccaagg attttcaaaa
     1681 cccaccaccc tgcaacttgt ctgccgctga ctgggatgac ggagatgatg cctgtttctt
     1741 agaagcgaca gaagatgctg aatttgctga cgctgcagat aagagtgttc ttggttcagt
     1801 ggacgatatt cctgacgagc taattataga agctttacag agcagctgac tgtggataga
     1861 acatacatca tgaggctaca atttgcctga aggctgagat tcaataacat gaatgttaaa
     1921 ttagtgctgg gcctatcgcc ctatgttaga atatgtacct acgccctgca tttagtctcc
     1981 tatatttaac atcacacaaa aaccaaatta tattacctta ttgttcacct gtttatagca
     2041 actatttatt acttggttag cctaaaccag acttattacc tctgacagga cagtagatgc
     2101 ttctaattaa ccaaagtgat tctgtgctag catttgcact gctgtcattc tgtgctagca
     2161 tttgcactgc tgtcattcat gagtttattg taggttaaaa ctcttgtgcc tggtgatga
//
