LOCUS       XM_039094879            2216 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus primase and DNA directed polymerase
            (Primpol), transcript variant X3, mRNA.
ACCESSION   XM_039094879
VERSION     XM_039094879.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039094879.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2216
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2216
                     /gene="Primpol"
                     /note="primase and DNA directed polymerase; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 4 ESTs, 10 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     18 samples with support for all annotated introns"
                     /db_xref="GeneID:361147"
                     /db_xref="RGD:1562119"
     CDS             242..1846
                     /gene="Primpol"
                     /codon_start=1
                     /product="DNA-directed primase/polymerase protein"
                     /protein_id="XP_038950807.1"
                     /db_xref="GeneID:361147"
                     /db_xref="RGD:1562119"
                     /translation="MMGKWESMVKQIEERASHYERKPLSSVYRPRLSKPEEPSSIWKI
                     FHRQNQAFNFVKSCKESVHVFALEHKMGNGQRIYLVTSYAQFWFYYKTRTTLLHCYEV
                     IPENAVCKLYFDLEFNKLANPGADGKEMVALLVQHVCEALQEIYSVHCSAEDVLNLDS
                     STEEKFSRHLIFQLHDVAFKDNTHVGNFVRKILQPALHLITKDDEDEITEAVGHEASC
                     FSVTPLKQEISEAWEKLALPKQCDPDLSFLVVKNHKGEKCLFVDLGVYTKNRNFRLYQ
                     SSKIGKRVSLEVAEDNRFIPKQSKDISEENQYFLSSLVSNVRFSDTLRILSCDPSQTK
                     RKRVEYSNSAGTSVEPIEGFQASPYPEVDRFVLSLVNKPDTEGGIRRWNYFFPEELLV
                     YDICKYRWCENIGRAHKSNNIMILVDLKNEVWYQKCHDPVCKAQNFKSTCFPLPTEVS
                     LLFLLKDEEDFTSGETDEDSNSLTKDFQNPPPCNLSAADWDDGDDACFLEATEDAEFA
                     DAADKSVLGSVDDIPDELIIEALQSS"
ORIGIN      
        1 ggggtttcaa gttctggttc ccgccatctc tgcctccacc atctgccgcc tccggccgac
       61 ttgcactgct tgaggtagct gacaccacta gtaactctag ctccagggga tccaagaaca
      121 cacgaccaca tccacacaaa tacacatggg tttctgctaa aattgaagac aaaggcatta
      181 atatagtgat tgacagaaag gtctctgtgg ctgggttcct gctctccatg cttctgaagc
      241 aatgatgggg aaatgggagt caatggtgaa gcagattgag gagcgggcat ctcactatga
      301 gaggaagcca ctgtcttccg tgtacagacc aagactgtcc aagccagaag aaccatcctc
      361 catttggaag atatttcatc gtcagaatca ggcttttaat tttgttaaaa gctgtaaaga
      421 gagtgttcac gtatttgctt tggagcacaa aatgggaaat ggacaacgta tttaccttgt
      481 aacatcctat gctcaatttt ggttttacta taagacccgg acaaccctcc tgcactgcta
      541 tgaagttatt cctgagaacg ctgtgtgcaa gctttatttt gatttggaat ttaacaaact
      601 ggccaatcca ggagctgacg ggaaggagat ggttgcactg cttgtacagc atgtctgtga
      661 agcactgcag gagatttaca gtgttcactg ctcagctgaa gatgttctca acctggattc
      721 cagcactgaa gaaaagttta gccgacacct aatatttcag ctccatgatg tggcgtttaa
      781 agataacact catgttggta attttgtgag aaaaattttg caacctgctc ttcacttaat
      841 caccaaggac gatgaggatg agatcacaga ggcagtgggc catgaagcct cctgtttttc
      901 tgttacacca ttaaaacaag agatttcaga ggcctgggag aagctggcgt tgcctaagca
      961 gtgtgacccc gatctttcat ttttagttgt gaaaaatcac aaaggagaaa aatgtctctt
     1021 tgtggatcta ggagtgtata caaaaaacag aaactttcga ctatatcaat catcaaaaat
     1081 aggaaagcgt gtgtctttgg aggttgcaga agataacaga tttattccaa aacagtcaaa
     1141 agatatttct gaggaaaacc agtatttcct gtcttccctg gtgagcaatg tcagattctc
     1201 agacacttta cgaattctct catgtgaccc gtctcagacc aaaagaaagc gggttgaata
     1261 ttctaacagt gctggcactt cagtggaacc cattgaaggc ttccaggcct ccccgtaccc
     1321 tgaggtcgac cgctttgttc tttctttggt gaataaacct gacactgaag gaggaattcg
     1381 gcgttggaac tactttttcc cagaagaatt gctggtttat gatatatgta aatatcgctg
     1441 gtgtgaaaac attggaagag cccacaagag taataatatc atgattctgg ttgatctgaa
     1501 aaatgaagtt tggtatcaga aatgccatga ccctgtatgt aaagcacaaa acttcaaatc
     1561 tacctgtttc ccactaccca ctgaagtaag tctcctgttt cttctgaaag atgaagaaga
     1621 tttcacttct ggagaaacag atgaagacag caactcacta accaaggatt ttcaaaaccc
     1681 accaccctgc aacttgtctg ccgctgactg ggatgacgga gatgatgcct gtttcttaga
     1741 agcgacagaa gatgctgaat ttgctgacgc tgcagataag agtgttcttg gttcagtgga
     1801 cgatattcct gacgagctaa ttatagaagc tttacagagc agctgactgt ggatagaaca
     1861 tacatcatga ggctacaatt tgcctgaagg ctgagattca ataacatgaa tgttaaatta
     1921 gtgctgggcc tatcgcccta tgttagaata tgtacctacg ccctgcattt agtctcctat
     1981 atttaacatc acacaaaaac caaattatat taccttattg ttcacctgtt tatagcaact
     2041 atttattact tggttagcct aaaccagact tattacctct gacaggacag tagatgcttc
     2101 taattaacca aagtgattct gtgctagcat ttgcactgct gtcattctgt gctagcattt
     2161 gcactgctgt cattcatgag tttattgtag gttaaaactc ttgtgcctgg tgatga
//
