LOCUS       XM_039083202            2004 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus DNA primase subunit 2 (Prim2),
            transcript variant X5, mRNA.
ACCESSION   XM_039083202
VERSION     XM_039083202.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039083202.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2004
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2004
                     /gene="Prim2"
                     /gene_synonym="Pola3"
                     /note="DNA primase subunit 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 16 ESTs, 2 long SRA reads, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 42 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:301323"
                     /db_xref="RGD:631433"
     CDS             136..1659
                     /gene="Prim2"
                     /gene_synonym="Pola3"
                     /codon_start=1
                     /product="DNA primase large subunit isoform X1"
                     /protein_id="XP_038939130.1"
                     /db_xref="GeneID:301323"
                     /db_xref="RGD:631433"
                     /translation="MQFSGRTRKKLRLAGDQRNACYPHSLQFYLQPPTENISLTEFES
                     LAFDRVKLLKAIENLGVSYVKGTEQYQSKLEAEIRKLKFSYRENLEDEYEPRRRDHIS
                     HFILRLAYCQSEDLRRWFIQQEMDLLRFRFSILPKDKVQSFLKDTHLHFEAISDEEKT
                     LREQDIMASSPSLSGVRWESESVYKVPFADALDLFRGRKVYLEDGFAYVPLKDIVAII
                     LNEFRATLSKALALTARSLPAVQSDERLQPLLSHLSHSYTGQDYSTQKSTGKISLDQI
                     DSLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTLEQALQFWKQEFIKG
                     KMDPDKFDKGYSYNIRHSFGKEGKRTDYTPFSCMKIILTNPPSQGDFHGCPFRHSDAE
                     LLKQKMQTYKIPASGISQILDLVKGNHYQVACQKYFEMTHNVDDCGFSLNHPNQFFFE
                     SQRILTGGKDIKKEASHPETPQHKPSTQKTKDATSALASLDSSLEMDLEGLEDYFSK"
ORIGIN      
        1 gattctggga tagagccagt ctctgtattt cctgggaaga gaaagacaac acaaaggagg
       61 acccatcagc gcatctgtct tctgaaggct gccagtatct tgaattgaat cgacggttgt
      121 ctttcagtgg tcaagatgca gttctcagga aggacccgga agaagctgag attggcaggt
      181 gaccagagaa acgcttgtta ccctcacagc cttcagttct atctgcagcc acctactgaa
      241 aacatatcat tgacagagtt tgaaagcttg gcttttgata gagtaaaatt gcttaaagca
      301 attgagaatc ttggtgtgag ctatgtgaaa ggaaccgaac agtaccagag taaactggag
      361 gctgagattc gaaagctcaa gttttcgtac agggagaacc tggaggatga gtacgagcct
      421 cggaggaggg accacatctc ccacttcatc ctgcgcctcg cttactgcca gtcggaagat
      481 cttagacggt ggtttattca acaggagatg gatctgcttc ggttccgatt cagtatttta
      541 cccaaggata aagtccagag tttcttgaag gatactcact tgcattttga ggctatcagt
      601 gatgaggaga agacccttcg ggaacaggat atcatggcgt cctctcccag cctaagtggg
      661 gtcaggtggg aatcggagtc agtgtataag gtcccctttg ctgacgctct ggacctgttc
      721 agaggaagga aagtctactt ggaagacggc tttgcttatg tgccacttaa ggacattgtg
      781 gccattatcc tgaacgagtt tagagccacg ctgtctaagg ccttggcact aacagccagg
      841 tccctgcctg ctgtgcagtc cgatgaacga cttcagcctc tgctcagcca cctcagtcat
      901 tcttacaccg gccaagatta tagtacccag aagagcaccg ggaagatttc cttagatcag
      961 attgattcgc tttcaacaaa atccttccca ccttgcatgc gtcagctgca caaggcgctg
     1021 agggaaaacc accatcttcg tcatggaggc cggatgcagt atggcctgtt cctcaagggc
     1081 attgggctaa cgttggagca agcattgcag ttctggaagc aagagtttat caaaggaaag
     1141 atggacccag acaagtttga taaaggttac tcttacaata tccgacatag ctttggaaag
     1201 gaaggcaaga ggacagacta tacgccattc agttgcatga agattatcct gaccaaccca
     1261 ccaagccagg gggatttcca tgggtgccca ttccgtcaca gtgatgcaga gctgctgaag
     1321 cagaagatgc agacctacaa gatccctgcc tcggggatca gccagatttt ggatttggta
     1381 aaggggaatc attaccaggt ggcctgtcag aagtacttcg agatgacgca caatgtggac
     1441 gattgtggct tttctttgaa tcatccgaat cagttctttt ttgagagcca gcgaatccta
     1501 actggtggca aagatatcaa gaaggaagca agccacccag aaacgcctca gcacaaaccc
     1561 agcacccaga agaccaagga tgccacgtct gctctggcct ctctagattc ctccctggaa
     1621 atggatctgg aggggctaga agactacttt agtaaatgac gtggcccctg gagcaactgg
     1681 agcaaataca ttcctgtttg aaaggtttgc ctttgtaaac ctttctcttc ctacccacgc
     1741 atgctcacac atgtactggg aaagcaggct tgcttccacc ttacttttga cagaatgaaa
     1801 aaggaagagt tcctatggaa acctttcatt gaatatttcg ttttgaatcc tgttccagaa
     1861 aatttaaaac agtactcagg gactaaaatc ctcaagcagc aatacaacta aaactaactt
     1921 ttaaagtttc acctagtttt ggccaagtct tcttttggat cgattttgct aataaacaac
     1981 atgtatatga ctatatccga gtaa
//
