LOCUS       XM_006244690            2043 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus DNA primase subunit 2 (Prim2),
            transcript variant X6, mRNA.
ACCESSION   XM_006244690
VERSION     XM_006244690.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006244690.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006244690.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2043
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2043
                     /gene="Prim2"
                     /gene_synonym="Pola3"
                     /note="DNA primase subunit 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 14 ESTs, 2 long SRA reads, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 67 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:301323"
                     /db_xref="RGD:631433"
     CDS             175..1698
                     /gene="Prim2"
                     /gene_synonym="Pola3"
                     /codon_start=1
                     /product="DNA primase large subunit isoform X1"
                     /protein_id="XP_006244752.1"
                     /db_xref="GeneID:301323"
                     /db_xref="RGD:631433"
                     /translation="MQFSGRTRKKLRLAGDQRNACYPHSLQFYLQPPTENISLTEFES
                     LAFDRVKLLKAIENLGVSYVKGTEQYQSKLEAEIRKLKFSYRENLEDEYEPRRRDHIS
                     HFILRLAYCQSEDLRRWFIQQEMDLLRFRFSILPKDKVQSFLKDTHLHFEAISDEEKT
                     LREQDIMASSPSLSGVRWESESVYKVPFADALDLFRGRKVYLEDGFAYVPLKDIVAII
                     LNEFRATLSKALALTARSLPAVQSDERLQPLLSHLSHSYTGQDYSTQKSTGKISLDQI
                     DSLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTLEQALQFWKQEFIKG
                     KMDPDKFDKGYSYNIRHSFGKEGKRTDYTPFSCMKIILTNPPSQGDFHGCPFRHSDAE
                     LLKQKMQTYKIPASGISQILDLVKGNHYQVACQKYFEMTHNVDDCGFSLNHPNQFFFE
                     SQRILTGGKDIKKEASHPETPQHKPSTQKTKDATSALASLDSSLEMDLEGLEDYFSK"
ORIGIN      
        1 ccccaaatga actctcccgc cacagggaaa gagcggctgt cagcgcgggt gtttcgtcca
       61 gtttggttgc tggctggtta aagaatatcc tgcgggtttg tttggagcgg agagaaactg
      121 tggggttgga agcttgcgag ttgacttggt gggaccgagt ggcaggtggt caagatgcag
      181 ttctcaggaa ggacccggaa gaagctgaga ttggcaggtg accagagaaa cgcttgttac
      241 cctcacagcc ttcagttcta tctgcagcca cctactgaaa acatatcatt gacagagttt
      301 gaaagcttgg cttttgatag agtaaaattg cttaaagcaa ttgagaatct tggtgtgagc
      361 tatgtgaaag gaaccgaaca gtaccagagt aaactggagg ctgagattcg aaagctcaag
      421 ttttcgtaca gggagaacct ggaggatgag tacgagcctc ggaggaggga ccacatctcc
      481 cacttcatcc tgcgcctcgc ttactgccag tcggaagatc ttagacggtg gtttattcaa
      541 caggagatgg atctgcttcg gttccgattc agtattttac ccaaggataa agtccagagt
      601 ttcttgaagg atactcactt gcattttgag gctatcagtg atgaggagaa gacccttcgg
      661 gaacaggata tcatggcgtc ctctcccagc ctaagtgggg tcaggtggga atcggagtca
      721 gtgtataagg tcccctttgc tgacgctctg gacctgttca gaggaaggaa agtctacttg
      781 gaagacggct ttgcttatgt gccacttaag gacattgtgg ccattatcct gaacgagttt
      841 agagccacgc tgtctaaggc cttggcacta acagccaggt ccctgcctgc tgtgcagtcc
      901 gatgaacgac ttcagcctct gctcagccac ctcagtcatt cttacaccgg ccaagattat
      961 agtacccaga agagcaccgg gaagatttcc ttagatcaga ttgattcgct ttcaacaaaa
     1021 tccttcccac cttgcatgcg tcagctgcac aaggcgctga gggaaaacca ccatcttcgt
     1081 catggaggcc ggatgcagta tggcctgttc ctcaagggca ttgggctaac gttggagcaa
     1141 gcattgcagt tctggaagca agagtttatc aaaggaaaga tggacccaga caagtttgat
     1201 aaaggttact cttacaatat ccgacatagc tttggaaagg aaggcaagag gacagactat
     1261 acgccattca gttgcatgaa gattatcctg accaacccac caagccaggg ggatttccat
     1321 gggtgcccat tccgtcacag tgatgcagag ctgctgaagc agaagatgca gacctacaag
     1381 atccctgcct cggggatcag ccagattttg gatttggtaa aggggaatca ttaccaggtg
     1441 gcctgtcaga agtacttcga gatgacgcac aatgtggacg attgtggctt ttctttgaat
     1501 catccgaatc agttcttttt tgagagccag cgaatcctaa ctggtggcaa agatatcaag
     1561 aaggaagcaa gccacccaga aacgcctcag cacaaaccca gcacccagaa gaccaaggat
     1621 gccacgtctg ctctggcctc tctagattcc tccctggaaa tggatctgga ggggctagaa
     1681 gactacttta gtaaatgacg tggcccctgg agcaactgga gcaaatacat tcctgtttga
     1741 aaggtttgcc tttgtaaacc tttctcttcc tacccacgca tgctcacaca tgtactggga
     1801 aagcaggctt gcttccacct tacttttgac agaatgaaaa aggaagagtt cctatggaaa
     1861 cctttcattg aatatttcgt tttgaatcct gttccagaaa atttaaaaca gtactcaggg
     1921 actaaaatcc tcaagcagca atacaactaa aactaacttt taaagtttca cctagttttg
     1981 gccaagtctt cttttggatc gattttgcta ataaacaaca tgtatatgac tatatccgag
     2041 taa
//
