LOCUS       XM_039084486            1459 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus prickle planar cell polarity protein 4
            (Prickle4), transcript variant X3, mRNA.
ACCESSION   XM_039084486
VERSION     XM_039084486.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1459
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1459
                     /gene="Prickle4"
                     /note="prickle planar cell polarity protein 4; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 16 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:316212"
                     /db_xref="RGD:1563979"
     CDS             320..1426
                     /gene="Prickle4"
                     /codon_start=1
                     /product="prickle-like protein 4 isoform X1"
                     /protein_id="XP_038940414.1"
                     /db_xref="GeneID:316212"
                     /db_xref="RGD:1563979"
                     /translation="MSVQNSDWSLQQDNPIFREPDPPVNTDSDSGHRPVQGYGDISVQ
                     APTSSSLGPPCPDISQASNWPGFRTLLQQLPPQDSDERYCLALGEEELAQLRLFCAQR
                     KQKSLGQGVARLLPPKLEGHTCEKCKKLLNPGEYGVFAARAGERCCWHRPCFACQACG
                     QALTNLIYFYHDGHLYCGRHHAELLRPRCPACDQLIFSQRCTEAEGRHWHENHFCCQD
                     CAEPLDGGRYALPGGSPCCPSCFARRYRSGGSSSIGAAEGQASLGNGGDGADLNGREQ
                     RLGLSMEGGNLPGQNPSPHTHAVLQQPLLQQHLVHPPQPPDASIGARSSHRASLACEL
                     QGPLEPTRRGCGAGLAPKRGRRSPTGGRRRGPLG"
ORIGIN      
        1 cgcggggcgg gatagggcgg agacagaggt aggagcaatc tctcaagccg aagagaatca
       61 cgaaagatag caaagcggat ctgaggagtc tggaccagac tcggaatcca ggaggggaag
      121 tgcacctgcc tggttgggac cgcttggggg cgtggccgac ggcaggtctc tgctgtacag
      181 cgttgtcgct tagccacgca gagacccttt cggaatcttg attcccactc gtaaacctgc
      241 agctagacag agacccccaa gagaactcgg aaacctggtg tgagggacag aacaggaagg
      301 aagcaggtga ctgtcaccaa tgtcagttca gaattctgac tggtccctcc aacaggacaa
      361 tcctatcttc agggagccag atccaccagt caacacagac agtgattcag gccaccggcc
      421 agtacagggc tatggggata tctctgttca ggctcctacg tcctcgagct tgggcccacc
      481 ttgcccggat atcagccaag cttcaaactg gcctggcttt cggaccctcc tgcagcagct
      541 tccaccacag gacagtgatg aacgctactg tttggcccta ggggaggagg aactggccca
      601 acttcgactt ttctgtgccc agcggaagca gaaatctctg ggacaggggg tggcccgtct
      661 actgcctcct aagcttgaag gccacacttg tgagaagtgc aagaagctgc tgaacccagg
      721 ggagtatgga gtgttcgccg ccagggccgg agagcggtgc tgctggcaca gaccttgttt
      781 tgcctgccag gcctgtggcc aggccctgac aaacctcatc tacttctacc acgatgggca
      841 cctgtactgt ggccgtcatc acgcagagct gctgcgacct cgatgtccgg cttgtgacca
      901 gctgatcttc tcccagcgct gcaccgaggc cgagggacga cactggcacg agaaccactt
      961 ctgctgccaa gactgcgcag agcccctgga tgggggacgt tatgccctgc cggggggtag
     1021 cccgtgctgc cccagctgct ttgcgagacg ctacagaagt gggggctcta gctcaatagg
     1081 ggcagcggaa ggacaggcgt cccttggtaa tggaggggat ggtgcagatc ttaatgggag
     1141 ggagcagcgg cttgggctga gcatggaagg gggtaatctc ccaggccaga acccctcgcc
     1201 ccatacccac gctgtcctac aacaaccact gctccagcaa cacctcgtcc acccaccgca
     1261 acccccagac gcgagcattg gggcccgcag ttctcaccgc gcgtccctgg cctgcgagct
     1321 ccaagggcct cttgaaccca cccggcgggg ctgcggcgcc ggactcgctc ccaagcgggg
     1381 gaggcggtcg cccactggtg gacggaggcg ggggcccctg gggtagactg gcggcagcgg
     1441 tggcgcgcac ggcacagcc
//
