LOCUS       NM_001014110            2283 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus prickle planar cell polarity protein 3
            (Prickle3), mRNA.
ACCESSION   NM_001014110 XM_228769
VERSION     NM_001014110.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2283)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC085918.1.
            
            On Apr 20, 2005 this sequence version replaced XM_228769.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC085918.1, SRR8487226.35050.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2283
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq12"
     gene            1..2283
                     /gene="Prickle3"
                     /note="prickle planar cell polarity protein 3"
                     /db_xref="GeneID:317380"
                     /db_xref="RGD:1359685"
     exon            1..108
                     /gene="Prickle3"
                     /inference="alignment:Splign:2.1.0"
     CDS             67..1938
                     /gene="Prickle3"
                     /note="LIM domain only 6; prickle-like protein 3; prickle
                     homolog 3"
                     /codon_start=1
                     /product="prickle planar cell polarity protein 3"
                     /protein_id="NP_001014132.1"
                     /db_xref="GeneID:317380"
                     /db_xref="RGD:1359685"
                     /translation="MFARGSRRRRSGRAPPEAEDPARGQPCNSCREQCPGFLLHGWRK
                     ICQHCKCPREEHAVHTVPVDLERIMCRLISDFQRHSISDDDSGCASEEYAWVPPGLKP
                     EQVYQFFSCLPEDKVPYVNSPGEKYRIKQLLHQLPPHDSEAQYCTALEEEEKKELRAF
                     SQQRKRENLGRATVRIFPVTITGAICEECGKQIGGGDIAVFASRAGLGACWHPQCFVC
                     TTCQELLVDLIYFYHAGKVYCGRHHAECLRPRCQACDEIIFSPECTEAEGRHWHMGHF
                     CCFECEASLGGQRYVMRQSRPHCCACYEARHAEYCDGCGEHIGLDQGQMAYEGQHWHA
                     SDRCFCCSRCGRALLGRPFLPRRGLIFCSRACSLGSETTTAGPGRRSWSAGTVTTALT
                     ASTASFSATEVTSETASKGTCTKSEPAAGPEEPSHFLRGAPHRHSMPELGLRSAPEPP
                     TESPGHPALHPDDNTTFGRQSTPRVSFRDPLVSEGGPRRTLSAPPAQRRRPRSPPPRA
                     PSCYHHHHRRRRRRRRRGSHQHHHHPGRHGHHRCDLGSGSDSGSCSSSPSSPSSESSE
                     DDGFFLGERIPLPPHLCRPKTTQGTATETFNSAAQPLVQESHPVMPRQTRDKNCIVA"
     exon            109..194
                     /gene="Prickle3"
                     /inference="alignment:Splign:2.1.0"
     exon            195..378
                     /gene="Prickle3"
                     /inference="alignment:Splign:2.1.0"
     exon            379..492
                     /gene="Prickle3"
                     /inference="alignment:Splign:2.1.0"
     exon            493..630
                     /gene="Prickle3"
                     /inference="alignment:Splign:2.1.0"
     exon            631..834
                     /gene="Prickle3"
                     /inference="alignment:Splign:2.1.0"
     exon            835..1021
                     /gene="Prickle3"
                     /inference="alignment:Splign:2.1.0"
     exon            1022..1321
                     /gene="Prickle3"
                     /inference="alignment:Splign:2.1.0"
     exon            1322..2167
                     /gene="Prickle3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgacgcgccg tggcagcaga ctccattcgt ctgacccagc cgggcttgtc tctgtctggg
       61 cgcgccatgt tcgcgcgtgg gtccaggagg cgccgctccg ggcgtgcgcc tccagaggca
      121 gaggaccctg cccgcggcca gccttgcaac tcctgcaggg aacagtgccc aggcttcctg
      181 ctgcacggct ggagaaagat ctgccagcac tgcaaatgcc cacgggagga gcatgctgta
      241 cacactgtgc ctgtggacct agaacgcatc atgtgccggc tcatctcaga cttccagcgc
      301 cactccattt ccgatgacga ctcaggctgt gcctcagagg agtatgcctg ggtaccccct
      361 ggccttaagc cggagcaggt ttaccagttt ttcagttgcc ttccagagga caaggtcccc
      421 tatgtcaaca gtcctgggga gaaatacagg ataaagcagc tgctgcatca gctaccccca
      481 cacgacagtg aggcacagta ctgcacagcc ctggaagagg aggagaagaa agagttgcga
      541 gccttcagcc agcagaggaa gagggagaat ctgggacggg ccaccgttcg aatcttccca
      601 gtgaccatta ctggggccat ctgcgaggag tgtggaaagc agatcggagg tggggacatt
      661 gcagtctttg ccagtcgcgc aggccttggt gcctgttggc accctcagtg ctttgtgtgt
      721 accacctgcc aggagttgct ggttgacctc atctacttct atcatgctgg caaggtgtac
      781 tgtgggcgcc accatgctga atgcctgcgc cctcgctgcc aagcgtgtga tgagatcatc
      841 ttctcccctg aatgtacaga ggcggaaggc cgacactggc acatgggtca cttctgctgt
      901 ttcgagtgtg aagcttcatt aggagggcag cgctatgtca tgcgtcagag ccgcccccac
      961 tgctgcgcct gctatgaggc ccgccatgcg gaatactgtg atggctgtgg ggaacacatc
     1021 ggcctggacc agggtcagat ggcttatgag ggccaacact ggcatgcttc agatcgatgc
     1081 ttctgctgta gtcgttgtgg tcgagctctc ctgggccgcc ctttcctgcc acgtcgaggc
     1141 ctaatcttct gctcacgagc ctgcagcctt gggtctgaga ccaccactgc agggccgggc
     1201 cgtcgcagct ggagcgccgg cactgtcacc acagcactca cagcttccac agcttctttc
     1261 tcagctaccg aggtgacatc agagacagcc agcaaaggca cctgtaccaa gtcagagcct
     1321 gctgcaggcc ctgaagagcc ctcccacttt ctgagagggg ccccccaccg tcactccatg
     1381 cctgaactgg ggcttcgcag tgctcctgag ccacctacag aatcccctgg ccatcctgcc
     1441 ctgcacccag atgataacac cacctttggt cgccagagta cgcctcgtgt cagcttccga
     1501 gaccctctgg tatctgaagg aggtccacga aggaccctta gtgcacctcc agcccagcgc
     1561 cgtagaccgc gaagtccccc acccagagcc cccagctgct accaccatca ccaccgccgt
     1621 cggagacggc gccgtcgccg agggagccac cagcaccacc accatcctgg cagacatggc
     1681 caccatcgct gtgacttggg atcgggttca gattctggat cttgttccag ttcaccctcc
     1741 agccccagtt cagagtcttc tgaggatgat ggcttcttcc taggggagcg catcccactg
     1801 ccccctcacc tgtgcagacc caagaccact cagggcactg caactgaaac ctttaactcg
     1861 gcagcccagc cacttgtcca agagtctcac ccagtgatgc ctcgccagac ccgggacaag
     1921 aactgcatcg tggcttgaag gaaggcagct ttagaaggaa ctctaccttt ctaaagtcag
     1981 tgtaaatgat gagtgtcctg aactaagtca tagtcccctt ctgcactccc atcttgtttg
     2041 tattagcaaa gcaatgtaag agttgttaaa gaaacgcctg gcttctttgt cccgatggct
     2101 ttacctcaat ttcccttctc ctgatactaa cacacatttg atcaaaaaaa ttaacttctt
     2161 cattataaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     2221 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     2281 aaa
//
