LOCUS       XM_039091126            3576 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus proline and arginine rich end leucine
            rich repeat protein (Prelp), transcript variant X3, mRNA.
ACCESSION   XM_039091126
VERSION     XM_039091126.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3576
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3576
                     /gene="Prelp"
                     /note="proline and arginine rich end leucine rich repeat
                     protein; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 109 ESTs, 5 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:84400"
                     /db_xref="RGD:620226"
     CDS             127..1260
                     /gene="Prelp"
                     /codon_start=1
                     /product="prolargin isoform X1"
                     /protein_id="XP_038947054.1"
                     /db_xref="GeneID:84400"
                     /db_xref="RGD:620226"
                     /translation="MRASFFWFLPLLLILASVAQGQPRPKPGIRRKPKPRPTPSFPQP
                     HEPAEPTDLPPPLPPGPPSVFPDCPRECYCPPDFPSALYCDSRNLRKVPIIPPRIHYL
                     YLQNNFITELPVESFKNATGLRWINLDNNRIRKVDQRVLEKLPGLAFLYMDKNQLEEV
                     PSALPRNLEQLRLSQNLISRIPPGVFSKLENLLLLDLQHNRLSDGVFKADTFQGLKNL
                     MQLNLAHNILRRMPPKVPPAIHQLYLDSNKIETIPSGYFKDFPNLAFIRMNYNKLSDR
                     GLPKNSFNISNLLVLHLSHNKISNVPAISNKLEHLYLNNNSIEKINGTQICPSNLVAF
                     HDFSSDLENVPHLRYLRLDGNFLKPPIPLDLMMCFRLLQSVVI"
ORIGIN      
        1 gacacgcacc aactgggagt ccagaacttc tagctggctc tctgctaacg cagcttcacc
       61 aaagggtggg gaggaacaga ggagtgctcc agcgtccaga ggagaggcag gtacatcacc
      121 tggatcatga gggcatcctt cttctggttc cttccacttc tcctcatctt ggcctcagtg
      181 gcccaaggcc agccaagacc aaaacctggg attaggcgta aacccaagcc aaggcccaca
      241 cccagctttc ctcagcccca cgagccagca gagcccacag acctgcctcc accccttcct
      301 cctggccctc catctgtctt ccctgactgt ccacgggaat gctactgccc gcctgacttc
      361 ccatcagccc tctactgtga cagccgaaac cttcgcaagg tcccaatcat cccaccccga
      421 attcactacc tttatctgca gaacaacttc atcaccgagc tccccgtaga atctttcaaa
      481 aatgccacag gcctcaggtg gatcaacctg gacaacaacc gcattcgcaa ggtggaccag
      541 agagtgctgg agaagctccc tggcctggca ttcctctaca tggacaagaa ccagctggaa
      601 gaggtgccat cagctctgcc ccggaacctg gaacagctga ggctaagcca gaacctcatc
      661 tccaggatcc cgcccggagt attcagcaag cttgagaacc ttctgcttct ggatctgcag
      721 cacaataggc tgagcgacgg agtcttcaaa gccgacacct tccagggcct caagaacctc
      781 atgcaactca atctggccca caacatcctg agaaggatgc cccccaaggt gcccccggcc
      841 attcaccagc tctacctgga cagcaataag atcgagacca ttcccagcgg atacttcaag
      901 gacttcccca accttgcctt catccgcatg aactacaaca agctgtcgga tcgagggctc
      961 cccaagaact ccttcaacat ctccaacttg ctggtgctcc acttgtcaca caacaagatc
     1021 agcaatgtgc cggccatcag caacaagctg gaacacctgt acctcaacaa caatagcata
     1081 gagaagatca atgggaccca gatttgcccc agcaacctag tggccttcca tgacttctcc
     1141 tcggatctgg aaaacgtgcc acacctgcgc tacctgcggc tggatgggaa tttcctgaag
     1201 ccacccatcc cgttggacct catgatgtgc ttccgcctcc tgcagtctgt ggttatctag
     1261 gctgtgccca gagctggacc tcctctgaca gcacttgaag gctggtggcc caagctcact
     1321 gtttttatct gtctccctct cttgctccca gccctgcctt ttgtcccctg gcgtggatgg
     1381 taaataccac ataacctgct ccagctctaa agcaagagtc cccacccagt ccaaagacac
     1441 cctgccagcc aaaacctctg gtcttctttg gtctcccttt gcttcagaaa cataggtgga
     1501 tgccaacaga cacaacccct ccacccccca ctccacgagt ctctcctggg taaggctggg
     1561 ccatggactg acatcttatt ttagtgttag ccgagtaaga agcagaaacc attctgggag
     1621 tgaaccctgg aaagttccac tgagaatccc tccatttggg caactctgtc tcaagaaggc
     1681 cgatagatcc aggtctccta agcctgagat cccttccgaa gctgtcgttc tgccactgtt
     1741 ccctgacatc acacagatgt caccctgttc tctactgtct tgaattcttc agaaaggaag
     1801 tgtggaggaa tgaataacta aggtggggta gagggtcagg gttccccaca agttccagcc
     1861 cttcctcctt tggggtaaac acagaggcca cttagatgga cctcagagag gaacagccag
     1921 ggaggcacag agtggttcaa ggaactagac tttagctaat aggtggtggc tgggggatgt
     1981 cagagcccca aactgggcct gtgtggatgt agacaggccc tgcaatctcc ctcacccaaa
     2041 cttgacaaaa ggctctaagc cctggaggac agtgttcgca atggagggcc aagaggcttt
     2101 gtccctgctt cgtctgctct ctatcatggg tgagactcag tcagtcgccc caccccaaag
     2161 gcagttctta agaaacagag gaagaggtgg agcgcctaga aatctcccag aagcctcttc
     2221 cacagtgggg attagcctct acctctaagt ccgactcatc agcgacatct ggtggctggt
     2281 gaaagtcaca gctgagtccc ctctctttgg gtgatactgc gattctctga ttctataggg
     2341 gaaccagctg agtgtctttc tcctgttggg tctaaaggga agggcagagg ttgggggttc
     2401 gttcccatca ggagtgattg tgagtgggaa ggctttgaga gtctaaggaa agctagtttg
     2461 agaatggcct tgtcaggtct ctcttgctct cggcttccac agtagatccg atgatcctcc
     2521 aaggccctct cagagcatct gtttcacatc tgtgcaccct cttctagcgc acacctaacg
     2581 caggacaagt ggcatcgccc tccctttgca gtaatttatt ccctgcatag agtgtccctc
     2641 ccccaacgac ttcccactct tctttcctag cccaggtgag cagcttggca ggttcccaag
     2701 aacctgggct tcctgccttt cccttccctt ctcctccctc tagggaaggc tgcctttgcc
     2761 ctgccacagt tctctgggtg gatgaggagg aggaatatgt ggagatgaat gttctggaag
     2821 tgagtgaaac acaggaccca tcctccttaa gctggggcag gctctggagg cttcacggtg
     2881 tcacagaaac ctatttgaag acattggatt aggctgggcc ctatagtcca gaagctccat
     2941 ttatattctc agtcaccttt cttgttgttg aaaatagagc ccacttcata ccgccttttc
     3001 cctgcagtgc aacgtcctcg ttcttcctag ttgcagctgg tttctccaag gctcctgctt
     3061 aaagtcaatg cattattatg gctgaaagca acctggtgct acggcctgga caagccccct
     3121 ctgcacccac gataacctgc aacctctggc cctctcagga ggcccacggg gatcacagct
     3181 cctgtggccg ctagggatgg gggggtgggc actgatcctg caaacctgaa ctagcatccc
     3241 accattggca tcccattatc caccctggac catgccagct tcctcccctg ctctctgcat
     3301 ctgtcagctg gagggacaag agttaagctg gctttacagg aaacgtacag acagtgctgg
     3361 ttacctcgag gtttagacac aagtttattc aatcagtgcc tttagcattt atacacaggc
     3421 atgtgcgtgt gtacacacgt gcgcatgtgc gaactcacac cctgtgcgtc ttatccattc
     3481 tccagaccat gttaactctg acccagcttc cacatttcaa caagcttcac cgcagtggaa
     3541 ataaagtcat gtgggaaata cccagcgtga acctga
//
