LOCUS       XM_039105128             880 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus peroxiredoxin 5 (Prdx5), transcript
            variant X1, mRNA.
ACCESSION   XM_039105128
VERSION     XM_039105128.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039105128.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..880
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..880
                     /gene="Prdx5"
                     /gene_synonym="Aoeb166"
                     /note="peroxiredoxin 5; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 3 mRNAs, 34 ESTs, 234
                     long SRA reads, 3 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     212 samples with support for all annotated introns"
                     /db_xref="GeneID:113898"
                     /db_xref="RGD:71007"
     CDS             250..738
                     /gene="Prdx5"
                     /gene_synonym="Aoeb166"
                     /codon_start=1
                     /product="peroxiredoxin-5, mitochondrial isoform X1"
                     /protein_id="XP_038961056.1"
                     /db_xref="GeneID:113898"
                     /db_xref="RGD:71007"
                     /translation="MAPIKVGDTIPSVEVFEGEPGKKVNLAELFKDKKGVLFGVPGAF
                     TPGCSKTHLPGFVEQAGALKAKGAQVVACLSVNDVFVTAEWGRAHQAEGKVQLLADPT
                     GAFGKETDLLLDDSLVSLFGNRRLKRFSMVIDKGVVKALNVEPDGTGLTCSLAPNILS
                     QL"
ORIGIN      
        1 tgtccgctgc ctgcacaagc gccgcccact ccactttggg gatcatccgc gccacgaagt
       61 cggggttgaa ctccacaggg ttgatgcgga cctcggtggc ctgcggggag aaaggtttgg
      121 cgaggcagca tagccggatc ggtgctccgt gcatcggcta cttggacgtg cgtggcaggc
      181 agagcaggcc ggaaaggagc aggttgggag tgtggtgggg cccgcagctt cagcagtgcc
      241 gcggtgacta tggccccgat caaggtggga gacaccattc cctcagtgga ggtatttgaa
      301 ggggaacctg gaaagaaggt gaacttggca gagctgttca aggacaagaa aggtgttttg
      361 tttggagtcc ctggggcatt tacacctggc tgttccaaga cccatctgcc tgggtttgtg
      421 gagcaagccg gagctctgaa ggccaaggga gcacaagtgg tggcctgtct gagtgttaat
      481 gatgtcttcg tgactgcaga gtggggtcga gcccaccagg cagaaggcaa ggttcagctc
      541 ctggctgacc ccactggagc ttttggaaag gagacagatt tactactaga tgattctttg
      601 gtgtctctct ttgggaatcg tcggctaaaa aggttctcca tggtgataga caagggcgta
      661 gtaaaggcac tgaacgtgga gccggatggc acaggcctca cctgcagcct ggcccccaac
      721 atcctctcac aactctgagg ccctgaccag aatgtcctct gactctccca tctcctccac
      781 ccagctctgg gccaaaggcc cagtacctcc ttacctgagg gccactggaa tggaaccttg
      841 acaatatttc tgcaataaac agtttaattt gtgtctttgc
//
