LOCUS       XM_008772189            2542 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus PR/SET domain 6 (Prdm6), transcript
            variant X1, mRNA.
ACCESSION   XM_008772189
VERSION     XM_008772189.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008772189.3.
            
            On Jan 21, 2021 this sequence version replaced XM_008772189.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2542
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2542
                     /gene="Prdm6"
                     /note="PR/SET domain 6; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 5 ESTs, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 25 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:307305"
                     /db_xref="RGD:1559594"
     CDS             552..2381
                     /gene="Prdm6"
                     /codon_start=1
                     /product="putative histone-lysine N-methyltransferase
                     PRDM6 isoform X1"
                     /protein_id="XP_008770411.1"
                     /db_xref="GeneID:307305"
                     /db_xref="RGD:1559594"
                     /translation="MLKPGDPGGSAFLKVDPAYLQHWQQLFPHGGGGGPLKGSGAALA
                     LGAPQSLQPPLPPPPPERAEPPPDSLRPRPASLSSVSSTPAPSSTSASSASSCAAAAA
                     AAAAALAGLSALPVSQMPVFAPLAAAAVAAEPLPPKDLCLGASSGPGPAKCGGGGSVG
                     DGRGVPRFRCSAEELDYYLYGQQRMEIIPLNQHTSDPNNRCDMCADNRNGECPMHGPL
                     HSLRRLVGTSSAAAAAPPPELPEWLRDLPREVCLCTSTVPGLAYGICAAQRIQQGTWI
                     GPFQGVLLPPEKVQTGAVRNTQHLWEIYDQDGTLQHFIDGGEPSKSSWMRYIRCARHC
                     GEQNLTVVQYRSNIFYRACVDIPRGTELLVWYNDSYTSFFGIPLQCIAQDENLNVPST
                     VMEAMCRQDSLQQPFNKSSKLSPSGQQRSVVFPQTPCSRNFSLLDKSGPIEAGFNQIN
                     VKNQRVLASPTSTSQLHSEFSDWHLWKCGQCFKTFTQRILLQMHVCTQNPDRPYQCGH
                     CSQSFSQPSELRNHVVTHSSDRPFKCGYCGRAFAGATTLNNHIRTHTGEKPFKKLGTF
                     CLLKRLEDFPHVCVRDVPFKAVTSVPVPREGTRLQFRVKWQLS"
ORIGIN      
        1 ctctctcctt ccttcttttc tccctccctc tccttcctcc ctctctcctt cctctctcct
       61 ctctcttctt ccctcctaac ctttcccgtc cctccccctc cctctctctt ctccctcctc
      121 tccactccat ccacacgctc gcgcttacac acgcttacat acacacacac gcacacgcac
      181 acacacgcac acacatgtat ttggtgctgt cgtaaaaccc acgtgtccag cagagaggct
      241 gccagagcag agcccaagct cccgagcggt cgagagcagc agccagagac agctccgtcc
      301 cgcgtcctcc cgcgctccgg cgctctctgc ggagctgctc ttgcgccctc cgcgggcctc
      361 cgtgtccgtt gccagcattc cggggagggc tccaggctgc ggggtctcta aggctctcgg
      421 tgtcctccgg cctggggtca tgtagctctc cccgggctcc cacccaccgt tcgtgcactg
      481 aaagggcctc ccgcacccag gaacgctagc ccccgccggc tgctctcggt ccccagctcg
      541 aggcgtcgga catgctgaag ccgggggacc ccggcggctc ggccttcctc aaagtggacc
      601 cagcttacct gcagcactgg cagcaactct tcccgcatgg aggaggcggc ggcccgctca
      661 aaggcagcgg cgccgcgctc gccctgggcg cgccccagtc cctgcagccg ccgctaccgc
      721 cgccgcctcc tgagcgcgcc gagcctccac cggacagcct gcggccgcgg cctgcctcgc
      781 tctcgtcagt ctcatccacc ccggctcctt cctccacctc tgcctcttct gcctcctcct
      841 gcgctgctgc cgccgccgcg gccgccgccg cgctggcggg tctctcggcc ctgcccgtgt
      901 cgcagatgcc ggtgttcgcg cctctagctg ctgctgcggt ggccgcggag ccgctgcccc
      961 caaaggacct gtgcctcggc gcctcctcgg gccccgggcc ggctaagtgc ggcggcggcg
     1021 gcagcgtggg tgacggccgt ggcgtcccac gtttccgctg cagcgccgag gagctggact
     1081 attacctgta tgggcagcag cgcatggaaa tcatcccgct caaccagcac accagcgacc
     1141 ccaacaatcg ttgcgacatg tgcgcggaca accgcaacgg ggagtgcccc atgcacgggc
     1201 cgctgcactc gctgcgccgg cttgtgggca ccagcagcgc ggcggccgct gcacccccgc
     1261 cggagctgcc cgagtggcta cgggacctgc cgcgggaggt atgcctgtgc accagcaccg
     1321 tgccaggcct ggcgtacggc atctgtgccg cacagaggat ccagcagggc acctggattg
     1381 ggcccttcca gggcgtgctc ctgcccccgg agaaagtgca gaccggcgca gtgaggaaca
     1441 cgcagcacct ctgggagatc tatgatcaag atgggacact tcagcacttt attgatggtg
     1501 gggagcctag taagtcgagc tggatgaggt atatccgatg tgcaaggcac tgtggagaac
     1561 agaatctaac agtagttcag tacaggtcga atatattcta ccgagcctgt gtagatattc
     1621 ccaggggcac cgagcttctg gtgtggtaca atgacagcta tacgtctttc tttgggattc
     1681 ctttacaatg cattgcccag gatgaaaact tgaatgtccc ttccacggta atggaagcca
     1741 tgtgccgaca agattccctg cagcagccct tcaacaagag cagcaagctt tctccctcgg
     1801 gccagcagcg ctccgtggtt ttcccacaga ctccctgcag caggaatttc tctctgttgg
     1861 ataaatctgg gcccatcgag gcaggattta accaaatcaa cgtgaagaat cagagggtcc
     1921 tggcgagccc aacctctacc agccagctgc actcggagtt cagcgactgg cacctctgga
     1981 agtgcggcca gtgctttaag actttcacgc agcgcattct cctgcagatg cacgtgtgta
     2041 cgcagaaccc tgacagaccc taccagtgtg gccactgctc gcagtccttt tcccagccat
     2101 cagaactgag gaaccacgta gtcactcact ccagtgaccg gcctttcaag tgtggctact
     2161 gtggccgtgc ctttgctggg gccaccaccc tcaacaacca catccggacc cacactggag
     2221 aaaagccctt caagaagttg gggactttct gtttgctgaa gcgtttggaa gactttccac
     2281 atgtatgtgt ccgtgatgtt cccttcaagg ctgtgacatc agtgcccgtg ccaagggaag
     2341 gcacaagatt gcaattcagg gttaaatggc agctcagctg aagccctcct ctgacctccc
     2401 agaaccaagg tgcgagaggt gcgagcggag cttcacccag gccacgcagc tgagtcggca
     2461 ccagcgcatg cccaatgagt gtaagccgat aaccgagagc ccggaatcaa tcgaagtgga
     2521 ttaactgatt gactggctgg aa
//
