LOCUS       XM_039108694            2222 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus PR/SET domain 5 (Prdm5), transcript
            variant X1, mRNA.
ACCESSION   XM_039108694
VERSION     XM_039108694.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 26, 2024 this sequence was replaced by
            NM_001427515.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2222
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2222
                     /gene="Prdm5"
                     /note="PR/SET domain 5; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 9 ESTs, 2 long SRA reads,
                     4 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 54 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:689788"
                     /db_xref="RGD:1588700"
     CDS             146..1945
                     /gene="Prdm5"
                     /codon_start=1
                     /product="PR domain zinc finger protein 5 isoform X1"
                     /protein_id="XP_038964622.1"
                     /db_xref="GeneID:689788"
                     /db_xref="RGD:1588700"
                     /translation="MLGMYVPDRFALKSSRVQDGMGLYTARRVRKGEKFGPFAGEKRM
                     PEDLDENMDYRLMWEVRGSKGEVLYILDATNPRHSNWLRFVHEAPSQERKNLAAIQEG
                     ENIFYLAVDDIETDTELLIGYLDSDVEAEEEEQQALTMAREGKVDHSKGQLAAGSKGH
                     LGCEEDFACPQCESSFPSEEVLTEHLQSLHQKPTGEKEFKCENCGKKFPVRQALQRHF
                     EQHQKACRGDARFVCKVDSCGKRLKSKDALKRHRENVHTGDPKRKLICSVCNRRCTSL
                     SSLQEHRKIHEIFDCQECMKKFISANQLKRHMITHSEKRPYNCEICNKSFKRLDQVGA
                     HKVIHSEDKPYQCKLCGKGFAHRNVYKNHKKTHSEERPFQCDECKALFRTPFSLQRHL
                     LIHNSERTFKCHHCDATFKRKDTLNVHVQVVHERHKKYRCELCSKAFVTPSVLRSHKK
                     THTGEKEKVCPYCGQKFASSGTLRVHIRSHTGERPYQCPYCEKGFSKNDGLKMHIRTH
                     TREKPYQCSECSKAFSQKRGLDEHKRTHTGEKPFQCDVCDLAFSLKKMLIRHKMTHNP
                     NRPMAECHFCHKKFTRNDYLKVHMDNIHGVADS"
ORIGIN      
        1 ccggccgagg aggggccagg ccgcggggag ccgaggaggg aggtggggat tctgggagcc
       61 gagctcattt cctcctcccg gccgcccctg gcccgcacct catctgcacg tgcggcgcca
      121 ccggagcgcg gcggagcagg ggaggatgct gggcatgtat gtaccagaca ggttcgccct
      181 gaagtcgtcc cgggtccagg acgggatggg gctctacacg gcccgtcgcg tgcgcaaggg
      241 tgaaaaattt ggacccttcg ctggggagaa gcgaatgcct gaagacttgg atgaaaatat
      301 ggactaccga ctgatgtggg aggtgcgtgg gagcaaggga gaagttctgt atattttgga
      361 tgctaccaac ccgagacact ccaactggct tcgctttgta catgaggcac catctcagga
      421 gcggaagaat ctggctgcaa ttcaagaagg agaaaatatt ttctacttgg cagtcgatga
      481 tatagaaaca gatacagagc ttttgattgg ctacctggac agtgatgtgg aggcagagga
      541 ggaggagcag caagctctga ccatggccag agaaggcaaa gttgaccact ctaagggaca
      601 gttggcagct ggaagtaaag gtcaccttgg ctgtgaagag gactttgcct gcccacagtg
      661 tgaatcgagc tttcccagtg aggaagttct tactgagcac cttcagagct tgcaccagaa
      721 gcccacaggg gagaaagagt tcaaatgcga gaactgcggg aagaagttcc ctgtgaggca
      781 ggccttgcag agacattttg agcagcacca gaaggcttgc cgaggggatg ccaggtttgt
      841 gtgcaaggtc gacagctgtg ggaagaggct gaaaagcaag gatgccctga aaaggcaccg
      901 ggaaaatgtc cacactggtg atcctaagag aaagctcata tgctcggtgt gcaatagaag
      961 gtgcacctca ttgtcgagcc tgcaggagca caggaagatt catgagatat ttgattgcca
     1021 agaatgtatg aaaaagttta tttctgctaa tcagctgaaa cgtcacatga ttacccattc
     1081 ggaaaagcgg ccttataact gtgagatctg taacaagtca ttcaagaggc tggatcaagt
     1141 gggtgcccac aaagtaatcc acagtgagga caaaccctat cagtgcaagc tctgtggaaa
     1201 gggattcgct cacagaaacg tttacaagaa ccacaagaag actcactcgg aggagaggcc
     1261 cttccagtgt gacgaatgta aagccttgtt ccgcaccccc ttttctctgc aaagacacct
     1321 gttaatccac aacagtgaga ggactttcaa gtgtcatcac tgcgacgcca cgtttaagag
     1381 gaaagacacg ttaaatgtgc atgtccaagt ggtccatgaa agacacaaga agtaccgatg
     1441 tgagctgtgc agtaaggcct ttgttacacc ctcagtgctt aggagtcaca agaagacaca
     1501 cacaggagaa aaggagaaag tctgcccata ttgtggccag aaattcgcca gcagtgggac
     1561 cctgagagtt cacatccgga gccacacagg tgagcgtccc tatcaatgcc catactgtga
     1621 aaaaggattc agtaaaaatg acggactgaa gatgcacatt cgtactcaca ccagggagaa
     1681 gccctaccag tgctcagagt gcagcaaggc cttcagccag aagcggggcc tcgatgagca
     1741 caagaggacg cacacaggag aaaagccttt tcagtgtgac gtatgtgact tggcttttag
     1801 cctgaagaaa atgctcatcc gacacaagat gactcacaat cccaaccgcc caatggcaga
     1861 gtgccatttc tgccataaga agtttacaag gaatgactac ctcaaagtgc acatggacaa
     1921 tatccatggt gtagctgaca gctaagagta gctgtcaagg aaccaaacca tgtgaaagag
     1981 cttctaatct gaatcccaga tacttctcac ctgattggct tatcagaaat aggcaaaaac
     2041 aatgcactgg tctcacagtg cttatctgcc tatctttgga atctgtagat gcaaagaaaa
     2101 aaatcttccc tttgccaaaa agaaattcaa atagaaaaaa aaatatactt tgtagtttac
     2161 agaatgttct ggttgattaa aaactaaata cagagttatg gctctttgtt ttatgaagtt
     2221 ca
//
