LOCUS       XM_006239337            6949 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus PR/SET domain 2 (Prdm2), transcript
            variant X5, mRNA.
ACCESSION   XM_006239337
VERSION     XM_006239337.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006239337.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6949
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6949
                     /gene="Prdm2"
                     /gene_synonym="Riz"
                     /note="PR/SET domain 2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 30 ESTs, 2 long SRA
                     reads, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 112
                     samples with support for all annotated introns"
                     /db_xref="GeneID:313678"
                     /db_xref="RGD:1594531"
     CDS             140..5008
                     /gene="Prdm2"
                     /gene_synonym="Riz"
                     /codon_start=1
                     /product="PR domain zinc finger protein 2 isoform X4"
                     /protein_id="XP_006239399.1"
                     /db_xref="GeneID:313678"
                     /db_xref="RGD:1594531"
                     /translation="MCIDATDPEKGNWLRYVNWACSGEEQNLFPLEINRAIYYKTLKP
                     IAPGEELLVWYNGEDNPEIAAAIEEERASARSKRSSPKSRRGKKKSHENKNKGIRTHP
                     TQLKASELDSTFANMRGSAEGPKEEDERPLASAPEQPAPLPEVGNQDAVPQVAIPLPA
                     CEPQPEVDGKQEVTDCEVNDVEEEELEEEEELEEEEEEELGEDGVEEADMPNESSAKE
                     PEIRCEEKPEDLLEEPQSMSNEAREDSPDVTPPPHTPRAREEANGDVLETFMFPCQHC
                     ERKFATKQGLERHMHIHISTINHAFKCKYCGKRFGTQINRRRHERRHETGLKRRPSMT
                     LQSSEDPDDGKGENVTSKDESSPPQLGQDCLILNSEKTSQEVLNSSFVEENGEVKELH
                     PCKYCKKVFGTHTNMRRHQRRVHERHLIPKGVRRKGGLLEEPQPPAEQAPPSQNVYVP
                     STEPEEEGETDDVYIMDISSNISENLNYYIDGKIQTNSSTSNCDVIEMESNSAHLYGI
                     DCLLTPVTVEITQNIKSTQVSVTDDLLKDSPSSTNCESKKRRTASPPVLPKIKTETES
                     DSTAPSCSLSLPLSISTAEVVSFHKEKGVYLSSKLKQLLQTQDKLTLPAGFSAAEIPK
                     LGPVCASAPASMLPVTSSRFKRRTSSPPSSPQHSPALRDFGKPNDGKAAWTDTVLTSK
                     KPKLESRSDSPAWSLSGRDERETGSPPCFDEYKISKEWAASSTFSSVCNQQPLDLSSG
                     VKQKSEGTGKTPVPWESVLDLSVHKKPCDSEGKEFKENHLAQPAAKKKKPTTCMLQKV
                     LLNEYNGVSLPTETTPEVTRSPSPCKSPDTQPDPELGPDSSCSVPTAESPPEVVGPSS
                     PPLQTASLSSGQLPPLLTPTEPSSPPPCPPVLTVATPPPPLLPTVPLSHPSSDASPQQ
                     CPSPFSNTTAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSSSSSFPSS
                     SCSSTSPSPPPLSAVSSVVSSGDNLEASLPAVTFKQEESESEGLKPKEEAPPAGGQSV
                     VQETFSKNFICNVCESPFLSIKDLTKHLSVHAEEWPFKCEFCVQLFKVKTDLSEHRFL
                     LHGVGNIFVCSVCKKEFAFLCNLQQHQRDLHPDEVCTHHEFESGTLRPQNFTDPSKAN
                     VEHMPSLPEEPLETSREEELNDSSEELYTTIKIMASGIKTKDPDVRLGLNQHYPSFKP
                     PPFQYHHRNPMGIGVTATNFTTHNIPQTFTTAIRCTKCGKGVDNMPELHKHILACASA
                     SDKKRYTPKKNPVPLKQTVQPKNGVVVLDNSGKNAFRRMGQPKRLSFNVELGKMSPNK
                     LKLSALKKKNQLVQKAILQKNRAAKQKADLRDTSEASSHICPYCDREFTYIGSLNKHA
                     AFSCPKKPLSPSKRKVSHSSKKGGHASSSSSDRNSSSHPRRRTADTEIKMQSTQAPLG
                     KTRARSTGPAQASLPSSSFRSRQNVKFAASVKSKKASSSSLRNSSPIRMAKITHVEGK
                     KPKAVAKSHSAQLSSKSSRGLHVRVQKSKAVIQSKTALASKRRTDRFIVKSRERSGGP
                     ITRSLQLAAAADLSESRREDSSARHELKDFSYSLRLASRCGSSTASYITRQCRKVKAA
                     AATPFQGPFLKE"
ORIGIN      
        1 aacactgagt ctgtggcagc cactgagact ctggctgagg tacctgaaca tgtgcttcga
       61 ggacttccag aggaagtaag acttttccca tctgcagtcg acaagactcg gattggtcta
      121 ctacccaaat ttggggtgga tgtgcattga tgccaccgat ccggagaagg gcaactggct
      181 acgctatgtg aactgggctt gctcaggaga agagcagaat ttatttccac tggaaatcaa
      241 cagagccatt tactataaaa ccttaaagcc aatcgcgcct ggcgaggagc tcctggtctg
      301 gtacaatggg gaagacaacc ctgagatagc agctgcgatt gaggaagagc gagccagcgc
      361 ccggagcaag cggagctccc cgaagagccg cagagggaag aagaaatcac acgagaacaa
      421 aaacaaaggc atcagaaccc accccacaca gctgaaggca agtgagctgg actctacctt
      481 tgcaaacatg aggggctctg cagaaggtcc aaaagaagag gatgagaggc ctttggcttc
      541 ggcacctgag cagccagccc ctctgccgga ggtggggaac caagatgcag ttccacaggt
      601 ggccatccct ctccctgcct gcgagccaca gccagaggta gatgggaaac aagaagtcac
      661 agactgtgag gtcaatgatg tggaggaaga ggagctggaa gaggaagagg agctggaaga
      721 ggaggaggag gaggagttgg gagaagatgg ggtagaagaa gcagacatgc cgaatgaaag
      781 ctctgcgaaa gagccggaga tccggtgtga agaaaagcca gaagacttat tagaagagcc
      841 acagagcatg tcgaatgaag ctcgtgaaga ctctccagac gtgacccctc ctccccacac
      901 tcccagagct agagaggagg ccaacggtga tgtacttgag acatttatgt ttccgtgtca
      961 gcactgtgaa agaaaatttg caacgaagca ggggctagag cgtcacatgc acatccacat
     1021 ttctaccatc aatcatgctt tcaagtgcaa gtactgtggg aaacggtttg gcacacagat
     1081 taacaggagg cggcatgaac ggcgccacga aacggggttg aagagaagac ccagcatgac
     1141 tttacagtcc tcagaggatc cagatgatgg caagggggaa aatgttactt ctaaagatga
     1201 gtcaagtcca cctcaactcg ggcaagactg tttgatattg aactcagaga aaacctcaca
     1261 ggaagtactg aattcatctt ttgtggaaga aaatggtgaa gttaaagaac ttcatccgtg
     1321 caaatactgc aaaaaggtat ttggaactca caccaatatg agacgacatc agcgtagagt
     1381 tcatgagcgc cacctgattc ccaaaggtgt caggcgaaaa ggaggacttc tggaagagcc
     1441 acagccacca gcagagcagg ctccaccctc ccagaatgtc tatgtcccaa gcacagagcc
     1501 agaggaggaa ggggaaacag atgacgtgta catcatggac atttctagca acatctctga
     1561 aaacctaaat tactatattg acggtaagat tcagaccaac agcagcacta gtaactgtga
     1621 tgtgattgag atggagtcta attctgcaca cttgtatggc atagactgtc tgctcactcc
     1681 agtgaccgtg gagattactc agaacataaa gagcactcag gtctctgtga cagatgatct
     1741 tctcaaagac tctcccagca gcacaaattg tgagtctaag aaacggagga ctgccagtcc
     1801 acctgtgctc cccaaaatta aaacggagac ggagtctgat tccacagcac cctcgtgttc
     1861 cttaagtctg cccctgagca tatccacagc cgaggtggtg tccttccata aagagaaggg
     1921 cgtctatttg tcgtccaagc tcaagcagct tcttcagacc caggacaagc tgacccttcc
     1981 tgcagggttt tcagcagctg agattcctaa gttaggtccc gtgtgtgcgt ctgctcctgc
     2041 atccatgttg cccgtgacct ctagtaggtt taagagacgc accagctctc caccgagctc
     2101 tccacagcac agccctgccc ttcgagactt cgggaaacca aatgatggga aagcagcatg
     2161 gacagacaca gtcctgactt ccaagaaacc caagttagaa agtcgtagtg actcaccagc
     2221 atggagtttg tctgggagag atgaaagaga aaccggaagc cctccttgct ttgatgaata
     2281 caaaatatca aaggaatggg cagccagttc tactttcagc agtgtgtgca accaacagcc
     2341 attggattta tccagcgggg tcaaacagaa gtcagagggc acaggcaaga ctccagtccc
     2401 atgggaatct gtattggatc tcagtgtgca taaaaagcct tgcgattctg aaggcaagga
     2461 attcaaagag aaccatttgg cacagccagc tgcaaagaag aaaaaaccaa ccacctgtat
     2521 gcttcaaaag gttcttctca atgagtataa tggtgttagc ttacctacag aaaccacacc
     2581 agaggtgacc aggagcccaa gtccttgtaa atccccagat acacagccag atcctgaact
     2641 tggtcctgac tcaagttgct cagtccccac tgctgagtct ccacctgaag ttgttggccc
     2701 ttcctcaccc cctctccaga cagcctcctt atcctccggt cagctgcctc ctctcttaac
     2761 ccccacagag ccttcttccc ctcccccctg ccctcctgtg ttaactgttg ccactccacc
     2821 acctcccctc cttccaaccg tccctctctc ccacccctct tctgatgcct cccctcagca
     2881 gtgtccctct ccgttctcaa acaccactgc tcagtctcct cttcccattc tctccccaac
     2941 agtgtctccc tctccctctc ccattcctcc tgtagagcca cttatgtctg ctgcttcccc
     3001 tggtccccca acactttctt cctcctcctc ttcttcctct tccttccctt cctcttcctg
     3061 ctcctccacc tccccctccc caccccctct ttcagcagtg tcatctgtgg tttcctctgg
     3121 ggacaacctg gaggcatctc tgcctgcagt aactttcaaa caggaggagt cagagagtga
     3181 aggtctgaaa cccaaggaag aggccccacc tgcaggggga cagagtgtgg tccaagaaac
     3241 attcagcaaa aacttcattt gcaatgtctg tgaatcgcct tttctttcca ttaaagacct
     3301 aaccaaacat ttatccgtcc atgctgaaga gtggcccttc aaatgtgagt tttgtgtgca
     3361 gctgtttaag gttaagactg atctatcaga gcatcgattt ctgcttcatg gggttggaaa
     3421 tatctttgtg tgttctgtat gtaagaaaga atttgccttc ttatgcaatc tgcagcagca
     3481 ccagcgtgat ctccacccag atgaggtatg cacacaccac gagtttgaaa gtgggaccct
     3541 gaggccccag aacttcacag accccagcaa ggccaatgtg gagcatatgc caagtttgcc
     3601 agaagagcct ttagaaactt ctagagagga ggagttaaat gattcctctg aagagcttta
     3661 cacgaccatc aaaataatgg cttctggaat aaagacgaag gatccagatg ttcgacttgg
     3721 tctcaaccag cactacccga gctttaaacc tcctccattt cagtaccacc atcgaaaccc
     3781 tatggggata ggggtgacag ccaccaactt caccacccac aatattccac agactttcac
     3841 tactgccatc cgctgcacaa agtgtgggaa gggcgtcgac aatatgcctg agctgcataa
     3901 gcatatcttg gcgtgtgcgt ctgcaagtga caagaagagg tacaccccta agaaaaaccc
     3961 agtgcccctg aaacaaactg tgcagcccaa aaatggagtg gtggttctag acaactctgg
     4021 gaaaaatgcc ttcagacgga tggggcagcc caagagactg agcttcaatg ttgaactggg
     4081 taaaatgtct ccaaacaagc tcaagctgag tgcgctgaag aagaaaaacc agctggtgca
     4141 gaaggccatc cttcagaaga acagagccgc gaagcagaag gcggacctga gggacacttc
     4201 cgaggcgtcc tcacacatct gcccgtactg tgacagggag ttcacataca ttggcagcct
     4261 gaataagcat gccgccttca gctgtcctaa aaaacctctt tctccttcca aaagaaaagt
     4321 ttcccattcg tctaagaaag gtggccatgc atcatcttct agcagtgaca gaaacagcag
     4381 cagccacccc cggaggcgga ctgcagatac cgagatcaag atgcagagca cgcaggcacc
     4441 cttgggcaag accagagctc ggagtacagg ccccgcccag gcctcactgc cctcctcgtc
     4501 cttcagatcc agacagaatg tcaaatttgc agcttcagtg aaatccaaaa aagcaagctc
     4561 ttcatccttg aggaattcca gtcccataag aatggccaaa attactcacg tcgagggcaa
     4621 aaaacccaaa gctgttgcca agagtcattc tgctcagctc tcaagcaaat cctcccgagg
     4681 cctgcatgtc agagtgcaga agagcaaagc tgtcatacag agcaagactg ccctggccag
     4741 taagaggaga acagaccggt tcatagtgaa atctagagag cgcagcgggg gcccaatcac
     4801 ccgaagcctt cagctggcag ctgctgcgga cctgagtgaa agcaggagag aggacagcag
     4861 tgccaggcat gagctgaagg acttcagcta cagtctccgc ctggcatctc gatgcggctc
     4921 atcaacagcc tcttacatca ccagacaatg cagaaaggtc aaggccgccg cagcaactcc
     4981 gttccaggga cccttcctca aagagtaggc actctgtctg ctccttaaca gcacctgaag
     5041 tgacctggaa tcagtgaagc caaagggacc agcagtctgc cctgcagaga gcactgacct
     5101 ctcccagttg tgagagtgag agaacgagag agagagagag agagagagag agagagagag
     5161 agagagagaa tgagaatgtg tgtgtgtgtg ctggtgcatg tgtgtggtct tcaagccaag
     5221 gtcccagcct caggagcagg accttcccat ttcccgtcat cctctggatg atccttggac
     5281 gtggcccaga accgtgctct gtggtgcagc catcctgccc gggaggggca tctccttcta
     5341 tgcaattttt ttaaagagtt ccttggccct gctttgtgct tcttgagctg tccgtttgcc
     5401 accactggga cttggatctg gccctgaggg gtggggaaga gggcctatct aaggataacc
     5461 tttcagaggt caagctcccc ttcatgccac ccctcccccc tgccctcacc gaccttttcc
     5521 ccacactgtc tctgggaatc aatagcagat agcatataga tccatcaggg ttgagcctga
     5581 acctcggccc tagcactagg aaatccccct tttctcccta agcaactgga gccgccagct
     5641 ttcaagtcat ttcctccttt gaggttctag agtccgagag tctgctccga agtctctcct
     5701 gggaacccgg gagccctcgc acccaggacg cagactctgt gcccattctt agacctgagg
     5761 tagaagaagc agtgttttgg gacgataggg tggaggcgtg cctactttgt ctcctctggt
     5821 gggacctcct acatcattgg catctgaacc ttgcaagttc gctgcaaaga gaagcaaagg
     5881 aaaaaaaaaa acaataaaaa agggaaataa gtaaaaggat gtgttcaaac aaccccagga
     5941 ggttttgaac aggtgatttt caaactgctt gccagggaag ggcagggctg acccctgccg
     6001 tggtgggcag ttggagtctc ggagaaacat ggaccttggt cactgaggtt ctggggtttt
     6061 gtgcctttgg ggcggaggat gcctgagaca attttggtac tgtttcctca gctccgttct
     6121 agtctctacc tgtcaaagtg ggaggacaga acttgggaga gttgtcacac aagagagggg
     6181 ctgccttttt tcagggctac tatggttgat attgcaactc tgtaaatatg tatgtagaca
     6241 cttttaaaag cacgtattta tggaccctac tgtaaatgcc ccgtttttaa agttttataa
     6301 cgtgttattt aattaatcag ttgactggct gcagtaaggg ggactgactg gtccaggaaa
     6361 aagggtccct ggagaccctc acgtgggcag gaaaacaccc atcattgtcc agtgtcacag
     6421 ttttctgatt cacccaccca gccaaactct ggcgtaccct tttttttact tcttcaactg
     6481 gaattgttcc ttctacacac cctgcagtta atcctcagaa gcatggactc gtggctgttg
     6541 ctaaccccac tgacacagta tgtcctacgg acacacggac tccatcccgg cccctcccag
     6601 cagccaggaa aatgcacgaa cccaaagcct tagcaagctg ctttcaacca aacttggaaa
     6661 atgttgctgg gctcttgggg gatctctctc tctctctctc tctctctctc tctctctctc
     6721 tctctttctc cctccatctc ttcctctctt tgcatgtgca aactgtgctg ggtcaccctt
     6781 caacacttcc cagattgtca ggaaaacaaa gagaaagctt cgtcaagcgt ggtgtttcct
     6841 ggtcagtgga ggtcttcccg agcgagcaga tttgggtccc actgaaggag atttagcgtc
     6901 tgccatgtga agacagtgaa caataaaagt gaggagcgat tgtgaaacc
//
