LOCUS       XM_039111362            9178 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus PR/SET domain 16 (Prdm16), transcript
            variant X1, mRNA.
ACCESSION   XM_039111362
VERSION     XM_039111362.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039111362.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9178
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..9178
                     /gene="Prdm16"
                     /note="PR/SET domain 16; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 13
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 40 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:100366024"
                     /db_xref="RGD:2324431"
     CDS             625..4455
                     /gene="Prdm16"
                     /codon_start=1
                     /product="histone-lysine N-methyltransferase PRDM16
                     isoform X1"
                     /protein_id="XP_038967290.1"
                     /db_xref="GeneID:100366024"
                     /db_xref="RGD:2324431"
                     /translation="MRSKARARKLAKSDGDVVNNMYEPDPDLLASQSAEEETEDGILS
                     PIPMGPPSPFPTSEDFTPKEGSPYEAPVYIPEDIPIPPDFELRESSIPGAGLGIWAKR
                     KMEIGERFGPYMVAPRAALKEADFGWEMLTDTEVSSQESCIKKQISEGLGSEKFCVDA
                     NQAGAGSWLKYIRVACSCDDQNLAMCQINEQIYYKVIKDIEPGEELLVHVKEGAYSLG
                     VMAPSLDEDPTFRCDECDELFQCRLDLRRHKKYACSSSGAPLYEGLGEELKPEGLGGG
                     NDGQAHECKDCERMFPNKYSLEQHMIVHTEEREYKCDQCPKAFNWKSNLIRHQMSHDS
                     GKRFECENCVKVFTDPSNLQRHIRSQHVGARAHACPDCGKTFATSSGLKQHKHIHSTV
                     KPFICEVCHKSYTQFSNLCRHKRMHADCRTQIKCKDCGQMFSTTSSLNKHRRFCEGKN
                     HYTPGGLFTPGLPLTPSPMMDKTKPSPTLNHGGLGFSEYFPSRPHPGSLPFSAAPPAF
                     PTLTPGFPGIFPPSLYPRPPLLPPTPLLKSPLNHGQDAKLHSPLGNPALPLVSAVSNS
                     SQGATAATGPEEKFDGRLEDSYVEKVKNRSPDMSDGSDFEDINTTTGTDLDTTTGTGS
                     DLDSDLDSDRDKSKDKGKPAESKPEFGGASVPPGAMNSVAEVPAFYSQHSFFPPPEEQ
                     LLTASGAAGDSIKAIASIAEKYFGPGFMSMQEKKLGSLPYHSVFPFQFLPNFPHSLYP
                     FTDRALAHNLLVKAEPKSPRDALKVGGPSAECPFDLTTKPKEAKPALLTPKAPLVPSS
                     GEEQPLDLSIGSRARASQNGGSREPRKNHIYGERKPGVGEGLPKVCPAQLPQQPSLHY
                     AKPSPFFMDPIYSRVEKRKVADPVGVLKEKYLRPSPLLFHPQMSAIETMTEKLESFAA
                     MKADSGSSLQPLPHHPFNFRSPPPTLSDPILRKGKERYTCRYCGKIFPRSANLTRHLR
                     THTGEQPYRCKYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCNRCFGQQTNLDRHLKK
                     HEHEGAPVSQHSGVLTNHLGTSASSPTSESDNHALLDEKEDSYFSEIRNFIANSEMNQ
                     ASTRMDKRPEVQDLDGNPPCPGSASAKQEDVEEEEEEELEEEDDDSLAGKSQEDTVSP
                     TPEPQGVYEDEEDEEPPNLTMDFDHTRRCVEERGGGLLALEPTPTFGKGLDLRRAAEE
                     AFEVKDVLNSTLDSEVLKQTLYRQAKNQAYAMMLSLSEDTPLHAPSQSSLDAWLNITG
                     PSSESGAFNPINHL"
ORIGIN      
        1 agggcagttc gggaggagag agctctgggg cgacgacgaa cgaaagcttt ttaattagta
       61 ataaaacgca ataaaacgct gcaaaagcag cccggacccg cgtccgaact atcagcgcct
      121 ttgcgggaga tcgaaggaag tcgcgcagaa acccgccgcg ggccagtctc ctctgaggct
      181 gggcttgggt aggagccaca gcgctgcgca gcgcagggcc agggcggggg gaccgtcacc
      241 tcgcctccag ggctacctgg gtccttttaa agtgtccggg gtgcgggccc cgggcgggag
      301 cgacgagcaa ggaatgtttt cttaaagggc cagttcagag ctgcgctgaa aagggggggg
      361 aggggggaga gagagaagtg aggtgaagac cgagaaggcc tcggagagcc ccccaatccc
      421 gcgccgaggc ggcggcggcg gcggcgcgac gaagaggatg atgaacacat tgcaaagttt
      481 ttttggcccc ggcgaggggt gtcagattga gtgctctgtg cgcatgtgcg aaggtgtcca
      541 aactgacaat gctagggaga tgaagatagt gtgtagctgc ttctgggctc aaggaggagg
      601 agagagattc cgcgagccga caccatgcga tccaaggcga gggcgaggaa gctagccaaa
      661 agtgacggtg acgttgtaaa taatatgtat gaacccgacc cggacctgct ggccagccag
      721 agcgctgagg aggagaccga ggacggtatc ctgtccccca tccctatggg gccaccgtcc
      781 cccttcccca ccagcgagga cttcactccc aaggagggct cgccctatga ggcccctgtc
      841 tacattcctg aagacattcc aatcccacca gacttcgagc tgcgagagtc ctccatacca
      901 ggagccggcc tggggatctg ggccaaacgg aagatggaaa tcggggagag gttcggcccc
      961 tacatggtgg cgccccgggc cgcgctgaag gaggccgact ttggatggga gatgctgaca
     1021 gacacagagg tgtcatccca ggagagctgc atcaaaaagc agatctctga aggtttgggc
     1081 agcgagaagt tctgcgtgga tgccaatcag gcgggggccg gcagctggct caagtacatc
     1141 cgtgtagcat gttcctgtga tgaccaaaac ctcgccatgt gtcagatcaa cgaacagatt
     1201 tactataaag tcattaagga catcgagcct ggagaggagc tgttggtgca tgtgaaagaa
     1261 ggtgcctact ccttgggtgt catggccccc agcctggatg aggatcccac gttccgctgc
     1321 gatgagtgtg atgagctctt ccagtgcagg ctggacctga gacgccataa gaagtatgca
     1381 tgcagctctt caggggcccc gctctacgag ggcctagggg aggagctcaa gcctgagggc
     1441 cttggtgggg gcaacgatgg gcaagcccat gaatgcaagg actgcgagcg gatgttcccc
     1501 aacaaataca gcttggagca acacatgatt gtccacacag aagagcgtga gtacaaatgt
     1561 gatcagtgtc ccaaggcctt caactggaag tccaacctca tccgccacca gatgtctcac
     1621 gacagtggca agcgcttcga atgtgaaaac tgcgtcaagg tgttcacaga ccccagcaac
     1681 ctccagcgtc acatccgctc acagcacgtc ggtgcccggg ctcatgcctg ccctgactgc
     1741 ggcaagacct ttgccacatc ctccggcctc aaacagcaca agcatatcca cagcacggtg
     1801 aagccattca tatgtgaggt ctgccacaag tcatacacgc agttctccaa cctgtgccgg
     1861 cacaagcgga tgcacgccga ctgcagaacg cagatcaagt gcaaggactg tgggcagatg
     1921 ttcagcacta cctcctccct caacaagcac cggagattct gcgagggcaa gaaccattac
     1981 acgccgggcg gcctcttcac cccgggcctg cccttgaccc ccagccccat gatggacaag
     2041 acgaagccct ccccaaccct caaccacggg ggcctaggct tcagcgagta cttcccctcc
     2101 agacctcatc ctgggagcct gcccttctcg gctgcccctc cggccttccc cacgctcaca
     2161 ccaggcttcc cgggcatctt ccctccatcc ttgtacccac gaccacctct gctacctccc
     2221 acaccgctgc tcaaaagtcc cctgaaccac gggcaggacg ccaagctaca cagcccgttg
     2281 ggaaacccag ccctgcccct tgtctctgcg gtcagcaaca gcagccaggg cgccacggcg
     2341 gccacggggc cggaggagaa attcgatggc cgcctggaag actcgtacgt agagaaggtc
     2401 aaaaacagga gccctgacat gtcggatggc agtgacttcg aggatatcaa caccacaacc
     2461 gggacagact tggacaccac caccggcaca gggtctgacc tggacagcga cctggacagt
     2521 gacagagaca aaagcaagga caaagggaag ccagcagaga gcaaacctga gtttgggggt
     2581 gcatcggtgc cccccggggc catgaacagt gtggctgagg taccggcctt ctattcacag
     2641 cattccttct tcccgcctcc tgaggaacag ctgctgacag cctcgggggc tgcgggcgac
     2701 tccatcaagg ccattgcgtc catcgcagag aagtacttcg gtcccggctt catgagcatg
     2761 caggagaaga agctgggctc gctaccctac cactccgtgt tccccttcca gttcctgcct
     2821 aacttccccc actctctcta cccctttacg gaccgagccc tcgcccacaa cttgctggtc
     2881 aaggctgagc caaagtcacc ccgggatgcc ctcaaggtgg gcggccccag tgcggagtgc
     2941 ccctttgacc tcaccaccaa accaaaagag gccaaacctg ccctgctcac acccaaggcc
     3001 cccctcgtgc cctcgtctgg cgaggaacag ccgctggacc tgagcatcgg cagcagggcc
     3061 cgggcgagcc aaaatggagg cagccgtgaa ccccggaaga accacatcta cggtgaacgc
     3121 aagccggggg ttggcgaggg gctgcctaag gtgtgcccag cacagctacc ccagcagcct
     3181 tccctgcact acgccaagcc ctcacccttc ttcatggatc ccatctacag cagggtagaa
     3241 aagcggaagg tggcggaccc cgtgggagtc ctgaaagaga agtacctgcg gccgtcccca
     3301 ctgctgttcc acccccagat gtcagccata gaaaccatga cggagaagct ggagagcttt
     3361 gcagccatga aggccgactc aggcagctcc ctgcagcccc tgcctcacca ccccttcaac
     3421 ttccgctccc cacccccaac actctcagat cccatcctca gaaagggcaa ggagagatac
     3481 acgtgcaggt actgtggcaa gatcttcccc agatctgcaa atctcacaag acatctgagg
     3541 acacacacgg gggaacagcc atacaggtgc aagtactgtg accggtcatt cagcatctcc
     3601 tccaacctcc agcggcacgt gaggaacatc cacaacaaag agaagccgtt caagtgccat
     3661 ttgtgcaacc gctgcttcgg gcagcagacc aacctagacc ggcacctgaa gaagcacgaa
     3721 cacgaaggtg caccagtgag ccagcactcc ggggtgctca cgaaccacct aggcaccagt
     3781 gcctcctccc ccacctccga gtcggacaac catgcacttt tagatgagaa ggaagattcc
     3841 tacttctccg agatccgaaa cttcatcgcc aacagcgaga tgaaccaggc gtccactcga
     3901 atggacaaac ggcctgaggt ccaagacctg gacggcaacc caccgtgtcc aggctccgcc
     3961 agtgcaaagc aggaggacgt agaggaggag gaggaggagg agctggagga agaggatgat
     4021 gacagtttag ccgggaaatc acaggaggac acagtgtccc ccacacctga gccccaagga
     4081 gtctatgaag atgaagagga tgaggaacca cccaacctga ccatggactt tgaccatacc
     4141 cgaaggtgtg ttgaggagcg aggaggcggc ctgttagctt tggagccgac gccgaccttt
     4201 gggaaggggc tggacctccg cagagcagct gaggaagcat ttgaagttaa agatgtgctt
     4261 aattccacct tagattctga ggtcttaaaa caaaccctgt acaggcaggc taagaaccag
     4321 gcatacgcaa tgatgctgtc cctctctgaa gacactcctc ttcacgcccc ctcccagagc
     4381 tcactggatg cttggttgaa catcacggga ccctcgtcgg agtccggagc ctttaacccc
     4441 atcaaccacc tctgaggacc tggaggcccc agggccagag tccaaagcca gggtaccagc
     4501 tgtgggagac agagaagggg ccagggagca gccccccacc cccgacacct tctgcctcaa
     4561 ctctgcttcc aaccccagcc gccatggctc aagcccagct tctccaatga aactcagaac
     4621 ccgaaggtcc ctcgagtagc cgctgacttt caacacctct cagacctggc ctcaaggaca
     4681 tgatctgcag tgggcacggc gcacggccac ccaggagctg cttgcaggag ctgtggatca
     4741 gaaaactcat gggcgagggt ggggggtctc catccgggca ggagccagtt ggccacctcc
     4801 gggccgccgc ctggtatgaa tgaaaagatg ggaaagaagt gggcaagtgc tatggagaga
     4861 gacctcgtga atgattttta taacaagaat cacatgatta acccttttgg taatcttaat
     4921 tgactataga gtctatttaa aagcatgtgg gttttaaaaa aaaagacagt attttttaaa
     4981 aaaaatcaga aaaatgactt gcaaaatgtt tttttaaaag taattttgca ttgctttgga
     5041 atgttggctt attggcaaac ccacacctgc aggggcatcc agcgcggctc aggtgtgccc
     5101 tttataatgt agataatgga gaatttcttt cttatctctg acctgtttgt acaagccaag
     5161 gtgattctgg tgcgcccgac acgggatagg ggcatggaag ccactcggct gaacaggacg
     5221 ctgactacac aagaatcctt ggacatggtg cctggctgaa ggtttgcaga ggccggaaca
     5281 gagaggttgc cttgccctgt atggtctgca gaggaatcca cgggttccac ccaagacacc
     5341 ccaattgtat ggggaagtcg ggagctagtg gctcaggtct tccatgccgg acacctaagg
     5401 gtcttcccct ttcagcagcc ctagcctggt cttgactgct gctcttctga aggccatatc
     5461 caggcctcca gccttcaacc ctccccaacc ctggcaggat gccctcccca tggccaccaa
     5521 gtgtgggaag cctgctcctc cactccagga caccaagtac tacctgtgcc taagactcca
     5581 gatcagccgc gtagccgcca tttctgctct ctgtgtgggt tcctggcgag gtgaggtcag
     5641 gaacaggagg aagatccagg ggaccctgcc acagcaaagg acagagacag tacagacacc
     5701 aggaccggat gcctcactcc cttgggacag tcgggacgtg tctacttctc tgctcggatg
     5761 ggctttaaat tatcccatag gggccaactt caaataattt ctttccctga tggaatttcc
     5821 cttaatctgt atatagcttg taattttttt ctaattcatt tctttcctta ttttatttct
     5881 tccttaacag tattttttgg cattggacaa cttttcctga agaaatgatg ttaatataag
     5941 tatgtggtga aggaccaaaa ccgtgtgata aggtcgtgtg ctgtgtgatc ggtgcccagg
     6001 gagtggggcg gttgttaatg tgccaaatac ccctgtgtcc ctccctccag gagtcccgcg
     6061 gtcaccgccg cccacttacc agacaatcat atgatttttg ttaaatttga gtctcagtta
     6121 cattttaaga caagtgttct atttattttg ttgttcggaa ggagaaaaac aaaaaaaaaa
     6181 aaaaaacaaa acaaaacaaa acaaaaaaaa aaaaacaaaa ggcaaggagt atcccaccaa
     6241 gataagaggg accggaaaca acccgggttg tcatttaaaa aactatgaga gattgtatcc
     6301 gcgtcagcaa acatggtgta cgcgtgtcgg tgccgtgggc ctgcgatccc ctctgggaga
     6361 aactcaaacc tccaagcgca gatgttttac acttgctgtg gctgttctcg caccaagaca
     6421 gtcctctttg ctgatgctga gtggtccagg ctatgctgag atccgtgaca gagatatccc
     6481 tgaagacacc ccctgcaggt tgcagtgaat cgcagggaca taacacagaa tagtcctcag
     6541 aagcacatgc ctgaggcggc ggggacactc tgcagaggga cttaccatgg tcctgtggtg
     6601 aggatttgca ggcctaactg ctcacgctcc tcaacgggac tcacgacatc ctctccatgg
     6661 cgggctggac ctcagcttaa aacttccagt ttcctctaga tgggagctag gtgggatccc
     6721 tgtatgagtt caacctcaga tattacatac cccacttttg taaaccccaa attacaagct
     6781 ttcttctcag aaagagcgag gtgtgtgctt ttttattttt ccgcgatgtg actttctcca
     6841 ggacagggag tctgtctgaa tgggggaccc ctgtggacct ttttgggctc ccttctcatc
     6901 ctctgtcact cccaacctct gtcgacctct gacccaagag tcccagctgt gctgagtcaa
     6961 atgcttggtc ccccctccaa cccccatgca cccccaacct cagtttctcc tggacagaca
     7021 tccccttggg cccagcactt ggagtttgac ggactctgtc cttgctcacc acccccgaca
     7081 aagacagcac ttgattttct gcactgagtt cccgacattc tgcatctgct ctacattgcc
     7141 ctcaaccagt gagttctgcc cgcccggcct ctctgcagtc ttaccgtgcc caactggctc
     7201 aagcaagcat caggtacagg agagcctctc agggtcaggg agctggacca ggtgtgagtt
     7261 caaaggtctc ggccaccgga gaaccaaacc ctaacagggc tgtcttgtct gttgccacac
     7321 agtgtagaag ggcaggacag atgtgcagcc atgattgctt gcagtgatgt tttccgttgt
     7381 ttgcacttgc ctccccaaat agaagttcat aaggaggcct cctagcttgc attccctcca
     7441 gccccaggca aggccacact ttggccccgt cattgctgcc atacctagga tggtcaggta
     7501 ggaaatacgg ggcttccctg tcctgcagga aggcagatcc tgcatgacta agacctctgt
     7561 gcaaacccag ggtgtaagtc tcagtaaccg gcgagcacaa catgggccca gcctgcccag
     7621 cctgtggggt cctacttccc aaggccagga gaacaggtga tctacccaaa cccagactga
     7681 cctaacccct ctgcctccca gagtccagac tcagagctcg tggcttcctc tgcttcatcc
     7741 gcttccccag agagtgtttg tgaaggaagc acttgctcaa atacatatca cgtgttttag
     7801 acgagaagct caaagcactg gatcacggtc ccctgtccct gcccaagtga ctgagatcta
     7861 ctgagctgtt cactgtgcca ttcgaggtag ggaagagaag gcctcccatg ctgttgccgg
     7921 gatgggaggg tggggaggcc tggaacagac agcgctcgct cctgccggtg gacactggga
     7981 cactcctgtc cgtggagatc agccgggtat caaaagccat gaagactgtc cctagccctg
     8041 agcgatactg tgacaagaca ttcttgaact cttacccaga caagttcact tcccccccca
     8101 ccattccagc cattgtctgt caccaattca caccgccact tctaggaggg aaaaggttga
     8161 gccgaaggga ggcagcttga atctctaggt gtgcgatcaa tcgattccct tgcaactggg
     8221 agaagctggg ggtttcctca gtgtctcccg caacgtagct actctattca gtgttgggga
     8281 agcggggccc tggtgtcagg atacataact taaaaacctg tgcgtgtggg gttgtgtgta
     8341 gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgggtgt gcatgtgtgc tgtgtatgtg
     8401 tactttgaac ctatagtata taaatataaa taaataaata tatatatccc tgacacccgc
     8461 gagaatctct gacctgtatg cgtgttgcca ttgttacatt cagatcccat tcagtttgtt
     8521 tctgtttctg ttttcgttgt cgtttttttt ttcttccccc ccttctagaa ctatatagtg
     8581 ttgagaaagg aatcaaatgt aaatgtctgc tctccatatg atgttaaaaa aaaaaattaa
     8641 aaaaaccatg gaggaggggg ccggcgtttg ccccgccccc ttcctttgta aattgctgtt
     8701 gtgttgataa gctgtgcatg gctcgtgttt agcggtcatt actgtgtctg tttgtggaat
     8761 tcttatgatg aggagaaaat cccgtagatg cacttactga ctatgtgatt aggtctaagt
     8821 cagggccagg agtcccaaaa acgcccacaa aaattaaaaa aaaaaaaaaa ttaaaaaaaa
     8881 aaatggaccg cagttcctgg tgactacgga aatcgccgtg ggagaatcgt gaatcgagga
     8941 gacacgactt gagaatagtc aaaagtgatt tttttttttt tggcagatct cattctgagg
     9001 cttacggcaa agagagatgt acttgtgtag agatttctgt aaggcgaaag ccaggagggc
     9061 ctggctttga ggtcaatgct gtagaatagg tctgactgga taccaaatgt aatctttccg
     9121 atgctacaat gaatttatac acgagattga tatgcaataa atctgtgtgt ttttctaa
//
