LOCUS       XM_017598097            6467 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus PR/SET domain 15 (Prdm15), transcript
            variant X2, mRNA.
ACCESSION   XM_017598097
VERSION     XM_017598097.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017598097.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017598097.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6467
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6467
                     /gene="Prdm15"
                     /note="PR/SET domain 15; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 62 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:304054"
                     /db_xref="RGD:1310055"
     CDS             2910..6467
                     /gene="Prdm15"
                     /codon_start=1
                     /product="PR domain zinc finger protein 15 isoform X2"
                     /protein_id="XP_017453586.1"
                     /db_xref="GeneID:304054"
                     /db_xref="RGD:1310055"
                     /translation="MPRHRPPASGAAQFPERIATRSPDPTPLCTFHRQVSAMAEDGSE
                     EIMFIWCEDCSQYHDSECPELGPVVMVKDSFVLSRARSSLPSNLEIRRLDDGAEGVFA
                     VTQLVKRTQFGPFESRRVAKWEKESAFPLKVFQKDGHPVCFDTSNEDDCNWMMLVRPA
                     LEPGHQNLTAYQHGSDVYFTTSKDIPAGTELRVWYAAFYAKKMDKPMLKQACSSVQAA
                     GTPEPSVTVEPERAQWVCKVCSNTFLELQLLNEHLLGHLEQSKSLPAGGQQQEAASEK
                     EPDAPRMEPPTAVESKSMQSATVTKEPKKKPRRGRKPKASKVEQPLVIIKDKEPAEHV
                     AEIITEVPPDEPVNATPDERIMELVLGKLATPTSEASSVPKFLHHPSSTIALKRGLVL
                     SSRHGVRRKLVRQLGEHKRIHQCGTCSKVFQNSSNLSRHVRSHGECAHGDKLFKCEEC
                     SKLFSRKESLKQHVSYKHSRNEVDGEYRYRCGSCGKTFRMESALEFHNCRTDDKTFQC
                     EMCFRFFSTNSNLSKHKKKHGDKKFACEVCSKMFYRKDVMLDHQRRHLDGVRRVKRED
                     LEASGESLVRYKKEPSGCPVCGKVFSCRSNMNKHLLTHGDKKYTCEICGRKFFRVDVL
                     RDHIHVHFKDIALMDDHQREEFIGKIGISSEENDDNSDESADSEPHKYSCKRCQLTFG
                     RGKEYLKHIMEVHKEKGHGCSICHRRFALKATYHAHMVIHRENLPDPNVQKYIHPCEI
                     CGRIFNSIGNLERHKLIHTGVKSHACEQCGKSFARKDMLKEHMRVHDNIREYLCAECG
                     KGMKTKHALRHHMKLHKGIKEYECKECHRKFAQKVNMLKHYKRHTGIKDFMCELCGKT
                     FSERNTMETHKLIHTVGKQWTCSVCDKKYVTEYMLQKHVQLTHDKVEAQSCQLCGTKV
                     STRASMSRHMRRKHPEVLAVRIDDLDHLPETTTIDASSIGIVQPALGLEQEELAEGKH
                     GKAAKRSHKRKQKPEEEAGAAVPEDTTFSEYPEKEPEFTGSVGDETNSAVQSIQQVVV
                     TLGDPNVTAPSSSVGLTNITVTPITTAAGTQFTNLQPVAVGHLTNPERQLQLDNSILT
                     VTFDTVSGSAMLHNRQNDVQIHPQPEATNPQSVAHFINLTTLVNSITPLGNQLSEQHP
                     LTWRAVPQTDVLQPPQAPAAPQQAVQPQVQNEQQQMYSY"
ORIGIN      
        1 gggcaatgga ctttgctcct cgtgttctat gttttgtgtg ctattgagca ccacccaggc
       61 cgcgctgggg ctaaaattta ctataggact ttagcagttc cagggagttc ctgggggatg
      121 atgaattgtg gatgctgcaa gccagaatct gtcctggccc aggtccccaa agcagtgccc
      181 gatatggccc gtgagagacg tgtgtgggga atgaaggcag ggggacattc atcggtttgg
      241 gcccttgctg tcctagcaga gggaacaggt aatagcttag ctatgggagc catgggtatg
      301 tgacagcgtt tgtgctttca caggacatgg cagtggtgtc tggggtaggg ctgagcagcc
      361 ttgctgcctg ctgtaagcat ctccccctcc tcgtggtctt cagtgtctgt ggtctccttc
      421 actttgctct gccatgtgca caaacaaaag cattgcattt ggagagatgc tgcattgggg
      481 aaccgccagg gagaccatct cggacttgct tacgcttcag ccctattcag cccgcttgcc
      541 tatgggacag cccatggggt ggtcagccac tgtcatctgc tcatcaggag gagtcagtca
      601 cccaagtcaa gccccatcca ttttctgcat cgaaggtggc atctaccgtg gcatctgttg
      661 ctgtgataaa acaccctcac gagaagcaat tcagggaaga aagggtttat tttggctcat
      721 agttctagaa ggatcagagt ccataatggc gggaaaggca attataagaa aaagcatagt
      781 aggcaggaga aggaagccag ctggttactt tgtcattcac atacaaattc aaacaagaag
      841 tgaggcaagg ttataaaccc agaaagccag tggtgcactt ccttcagcaa ggctgtaccc
      901 cttaaagcag tggttcttaa cctgtgaccc cctttacggg ttcaaagacc ctttcacaga
      961 tgccacctga gaccaccgga aaacagatac ttacattatg ttagtagcaa atttacacag
     1021 aaaatttgtt acataatagc aaaattatag ttattaagta gccacaaaaa tacttttatg
     1081 gttgtgggtc ataccatgag gaactatatt aaagggttgc agtgttggga aggttgagaa
     1141 tcactgtctt gatcccccaa acagcagcat caactgggga tcaagtgttc aaataccaga
     1201 gcccttggga agcctctttc attcagaccc cagcaggagt ggggacctta ctactggagc
     1261 aatggcagta ctctcactcc cagttcctca gccccacata ctgcacaggg caaggcagtg
     1321 atggcaatgc ctgtatctgg gattggagtg tgttaggatt ggaggggctg ggggactgtt
     1381 gctttccctg tagaccacca aggtctgctt tgtgctggca tcccaagagg ggactagaag
     1441 gccacactga tcataattta ccatctgtcc aggctgatct ctgctggcac ctccagagga
     1501 attctgaaca acccatcttc cctgccaggg ttggtccata tcagcaaccc ttagtcattc
     1561 tagactccac acattcactc tcagtatcac ccctatatta ttagatgggt aggctcaggc
     1621 cctgccttct caagaagtag ccagcaaaaa aggctcacaa gaacagctgc ctaccgtggt
     1681 tagtccacat gttcctctct tgggcttaga ttcgctgaac atagatattt tagcgtatcc
     1741 cacattcctg gtatctcaaa cttcctatcc cctttcctaa tttttcagtt tttctgctag
     1801 cttcaaacat cacttatcct ttcagtggct ccccacaatt attttgacct tacaacatat
     1861 catttggcct cctgtattta tattttgcat gtatgcaaaa ctagtatcat atggataaca
     1921 ccgaagtgcc ttgccagttc aaaaagtagc tggtttcttg ggtcaccatt accatggcct
     1981 cagtgcttag gcagctaaat atggtgaaaa taacattaag gtcacaactt actatggggg
     2041 ccctgtagaa gcagggagcc ttgacatcga gagctctctc ttcaaaggaa agtctctcaa
     2101 gtaagactgc tttcataccc tgttccaagg caaagtgtgt agcttagtag gtgaaatcca
     2161 ttcagcctcc atgtcttcct cagctccaga tttatattgt ttttcttact gtgacctgtc
     2221 aatttttcct cctgtacaca gcctgatttt atttgtacat ttagttctgc ttcatacgta
     2281 gaagctcaaa gagctggcct tctgggcact ttagaatgag caataccaat gaaagtggta
     2341 tacgggacag tgagatgtgt acctgtttta aaggtgtctt gaagggcaaa gatgtccttg
     2401 tctgctcagt tcactacact acctccctca ttctcacaca cagacacaca cacacacaca
     2461 cacacacaca cacacacaca cacacacaca cacacacaca cagctctaac cctaactcct
     2521 cagtccacaa accatctggc caactctcat tgatcacaca gcccttctcc tcagctttta
     2581 tgtccactcg gtcccttgga tcctcacagc ctgcttcacc agatctccat acattttctt
     2641 tcctgttccc catccacatt gccagttacc aactccgcat gcaggaagtc aaacatcctc
     2701 catgtctgca accacgaatc tttgtccccg ggttcaattc acacagccgt ttcctagggc
     2761 cactgtttac aaagtcccag ctagctccta ctctacacag ttatccttga ctccctgtta
     2821 acacagcacg aagtccccag caccaggtac aagcacccgg agcccagggc ccgccccgtc
     2881 ggcctgcact gcgtactaca actcccacga tgccgcgcca ccgccccccg gcttccggtg
     2941 ctgcgcagtt tccggagcgg atcgcaaccc ggagtccgga tccgaccccg ctctgcacat
     3001 tccacaggca ggtatcagca atggctgaag atggcagtga ggagatcatg tttatctggt
     3061 gtgaagactg cagccagtac catgactcag agtgtcctga actgggacct gtggtcatgg
     3121 tcaaggactc ctttgtgctg agcagggcaa ggtcctccct cccctctaac ctggagatca
     3181 ggcgcctgga tgacggggct gaaggtgtgt ttgcagtgac ccagctagtc aagcgcacac
     3241 aatttggtcc atttgagtcc agaagggtcg ccaagtggga gaaggaatct gcatttcctc
     3301 tgaaggtatt tcagaaggat gggcatcctg tgtgctttga cacttccaac gaggatgact
     3361 gcaactggat gatgctagtg cgaccagcac tagagcctgg gcaccagaac ctgacagcct
     3421 accagcatgg cagtgacgtg tacttcacca cctcaaagga cattcctgca ggcactgaac
     3481 tgcgtgtgtg gtatgctgcc ttttatgcca agaagatgga caagcccatg ctaaagcagg
     3541 cctgctccag tgttcaggct gcaggcaccc ctgagcccag tgtcactgtg gagcctgagc
     3601 gtgcccagtg ggtgtgtaag gtgtgttcca acaccttcct ggagcttcag ctcctgaacg
     3661 agcatctctt gggccacctg gagcaatcca aaagcctccc tgcaggtggc cagcagcaag
     3721 aggcagcttc tgagaaggag cctgatgcac ccaggatgga gcctcctaca gcagttgaga
     3781 gcaagagtat gcagagtgcc acagtcacca aagagccaaa gaaaaagcct cgaaggggga
     3841 ggaaacccaa agcatccaag gttgagcagc ctctggtcat tatcaaagac aaggagcctg
     3901 cagagcatgt ggcagagatc ataaccgagg tcccccccga tgagcctgtg aacgcaacac
     3961 cagatgaacg gataatggag ttagtcttgg ggaagctggc cacccccaca agtgaagcca
     4021 gctcagtgcc aaagttctta catcatccaa gcagcaccat tgccctcaag aggggcttgg
     4081 ttctgtccag cagacatggc gtccggcgga agctcgttcg acagctgggt gagcataaac
     4141 gcatccatca gtgtggcacc tgcagcaagg tcttccagaa cagcagcaac ctgagccggc
     4201 acgtgcgctc gcacggtgag tgcgcgcacg gtgacaagtt gtttaaatgt gaggaatgtt
     4261 cgaaattgtt cagccgtaag gaaagtctaa agcaacatgt ttcctacaag cacagccgga
     4321 atgaggtgga cggtgagtac cgctaccgct gtggcagctg tgggaagacg ttccgaatgg
     4381 agagtgcact ggagttccac aactgtagga cagatgacaa gacgttccaa tgtgagatgt
     4441 gtttcagatt cttctccacc aacagcaacc tctctaagca caagaagaaa catggggaca
     4501 agaagtttgc ctgtgaggtc tgcagtaaga tgttctaccg caaggatgtc atgctggacc
     4561 accagaggcg gcacttggat ggtgtgcggc gggtgaagag agaagacttg gaggccagcg
     4621 gggaaagcct ggttcgttac aagaaggaac cttctggatg tccagtgtgt ggcaaggtgt
     4681 tctcttgccg gagcaacatg aacaagcacc tgctgaccca cggtgacaag aagtacacct
     4741 gcgagatctg tgggcgcaag ttcttccgag tggacgtact cagggaccac attcatgtcc
     4801 acttcaagga catcgcgctg atggatgacc accagcggga ggagttcatt ggcaagattg
     4861 ggatctcctc agaggagaac gatgacaact ctgatgagag tgcagattct gagccacaca
     4921 agtacagctg caagaggtgc cagctcactt tcggccgtgg gaaggaatac ctgaagcaca
     4981 tcatggaggt tcacaaggag aagggccatg gctgcagcat ctgccaccga cgctttgcac
     5041 tcaaggctac ttaccacgcc cacatggtca tccaccgaga gaacctgcct gaccccaacg
     5101 tgcagaagta cattcacccc tgcgagatct gtgggcggat cttcaacagc atcgggaact
     5161 tggagcgcca caaactcatc cacacaggtg tgaaaagcca tgcctgtgag cagtgtggaa
     5221 agtcctttgc caggaaggac atgctgaaag agcacatgcg tgtgcatgac aacatccggg
     5281 agtacctgtg tgccgaatgc gggaaaggta tgaagaccaa gcatgcacta cgccaccata
     5341 tgaagctgca caaaggcatc aaggagtatg agtgcaagga atgtcaccgc aagtttgcac
     5401 agaaggtcaa catgctcaag cactacaaac ggcatacagg aattaaagac ttcatgtgtg
     5461 agttatgtgg gaagacattc agtgagagga atacaatgga gacacacaag ctcatccaca
     5521 cagtaggcaa gcagtggact tgttccgtgt gtgacaagaa gtacgtcacg gagtacatgc
     5581 ttcagaaaca cgtacagctc acccatgaca aggtggaagc acagagctgc cagctgtgtg
     5641 gcaccaaggt gtccacccgg gcctccatga gcagacacat gcggcgcaag caccccgagg
     5701 tcctcgctgt tcggattgac gatctggacc acctccccga gaccaccacc atcgatgcat
     5761 cctccatcgg cattgtccag cctgcactgg gcctagagca ggaggaactg gcagaaggta
     5821 agcatggaaa ggctgccaaa cgcagccaca agagaaagca gaagccagag gaagaggcag
     5881 gggccgcagt gcctgaggac accaccttca gcgaataccc cgagaaggag ccagagttca
     5941 caggcagtgt gggtgacgag acaaactctg ccgtacagag catccagcag gtggtggtga
     6001 ccctagggga ccccaatgtg actgctccat caagctctgt tggcctaacc aacatcaccg
     6061 tgacccccat caccactgca gctggaactc agtttaccaa tttacagcca gtggctgttg
     6121 gacatcttac caaccctgaa cgccagctac aactagataa ctccatcctg actgtgacct
     6181 ttgacactgt cagtggctcc gccatgttgc acaaccgtca aaatgatgtc cagatccacc
     6241 cacagccaga agccacaaac cctcagtcag tggctcactt tatcaacctc accaccctgg
     6301 taaactccat cacacccttg gggaaccagc tcagtgagca gcacccactc acctggcgag
     6361 ctgtgcccca gacagatgta ctgcagccgc cacaggcccc tgcagccccg cagcaggcgg
     6421 tgcaacccca ggtccagaat gagcagcagc agatgtatag ctactga
//
