LOCUS       XM_017595991            7071 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus PR/SET domain 10 (Prdm10), transcript
            variant X1, mRNA.
ACCESSION   XM_017595991
VERSION     XM_017595991.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_017595991.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7071
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7071
                     /gene="Prdm10"
                     /note="PR/SET domain 10; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 10
                     ESTs, 1 long SRA read, 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 17 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:500964"
                     /db_xref="RGD:1560384"
     CDS             467..3919
                     /gene="Prdm10"
                     /codon_start=1
                     /product="PR domain zinc finger protein 10 isoform X1"
                     /protein_id="XP_017451480.1"
                     /db_xref="GeneID:500964"
                     /db_xref="RGD:1560384"
                     /translation="MDPKDESSHVWPTSADHEQNTAQVHFVPDAGTVAQIVYTDDQVR
                     PPQQVVYTADGASYTSVDGPEHTLVYIHPVEAAQTLFTDPAQVAYVQQDATAQQVLPS
                     IESVDGSDPLATLQNPIARLDAKEEEEEEEDEDEDTEEEEEEDAEDTDVDDWQPDPPR
                     PFDPHDLWCEECNNAHSSVCPKHGPLHPIPNRPVLTRARASLPLVLYIDRFLGGVFSK
                     RRIPKRTQFGPVEGPLVRGSELKDCYIHLKVSLDKGDRKDRDLHEDLWFELSDETLCN
                     WMMFVRPAQNHLEQNLVAYQYGHHVYYTTIKNVEPKQELKVWYAASYAEFVNQKIHDI
                     SEEERKVLREQEKNWPCYECNRRFISSEQLQQHLNSHDEKLDVFTRTRGRGRGRGKRR
                     FGPGRRPGRPPKFIRLEITSENGEKSDDGTQDLLHFPEKEQFDEAEPAALNGLDQPEQ
                     ASIPVPQLPQETPTSLEQEPETHTLHLQPQQEESLVPTQTTLTADDMRRAKRIRLELQ
                     NAALQHLFIRKSFRPFKCLQCGKAFREKDKLDQHLRFHGREGNCPLTCDLCNKGFISS
                     ASLESHMKLHSDQKTYSCIFCPESFDRLDLLKDHVAIHVNDGYFTCPTCKKRFPDFIQ
                     VKKHVRSFHSEKIYQCTECDKAFCRPDKLRLHMLRHSDRKDFLCSTCGKQFKRKDKLR
                     EHMQRMHNPEREAKKADRISRSKTFKPRITSTDYDSFTFKCRLCMMGFRRRGMLVNHL
                     SKRHPDMKIEEVPELTLPIIKPNRDYFCQYCDKVYKSASKRKAHILKNHPGAELPPSI
                     RKLRPAGPGEPDPMLSTHTQLTGTIATPPVCCPHCSKQYSSKTKMVQHIRKKHPEYAQ
                     LPNTIHTPLTTAVISATPAVLTTDSATGETVVTTDLLTQAMTELSQTLTTDYRTPQGD
                     YQRIQYIPVSQSASGLQQPQHIQLQVVQVAPATSPHQSQQSTVDVGQLHDPQTYTQHA
                     IQVQHIQVTEPTPTAPSASQVAGQPLSPSAQPVQQGLSPSHIQGSSSTQGQALQQQQN
                     SSVQHTYLPNAWNSFRGYSSEIQMMTLPPGQFVITDSGVATPVTSGQVKAVTSGHYVL
                     SESQPELEEKQASALSGAVQVQPSAHSDSLDSTSPSQQQTTQYIITTTTNGNGGSEVH
                     ITKP"
ORIGIN      
        1 ttcagtcatt gggccattgt gtgaatctcc ttttggcttc tctgcagact gaattagcgt
       61 cccaggattt tcgtcatgac tcttaaatct gggcttgtca gttcggccca gcgttcctgg
      121 tctctaggaa cagcatggga ctttcagagt ttagccaatc acataacgtt gagatcaggt
      181 tgccaggcag attatgctaa taaggccccg ccttttatgc tgctcccact ctgcggcggg
      241 aagaaccacc tggaggcggc gggggggttt gatttccatc acccctaggg agagaggatc
      301 cgggacccgc tgatcttcca gctcccctca cccaacgtcg tgggcgctgt agagaccttc
      361 ctgccctcca tgagcacacg tgtacaggac ctacaagaca gatgagtgct ctctgtcctg
      421 agctactgct gtaggtggtt cagacttgga gctgtccaac aagaagatgg atcccaaaga
      481 tgaaagttct catgtgtggc caacgtctgc agaccatgaa cagaacactg cacaggtgca
      541 ctttgttccg gatgccggaa ctgtggctca gattgtatac actgacgacc aagtccgtcc
      601 accccagcag gtggtttata cggcagatgg tgcctcctac acgtcagtgg acggtccaga
      661 gcacacactg gtgtacatcc acccagtgga agctgcacag actctgttta cagatccagc
      721 ccaggtagct tatgtccaac aggatgccac agctcaacag gtgctgcctt ccattgagag
      781 tgtggatggt tcagaccctc tggcaactct gcagaaccca attgccagac tagatgcaaa
      841 agaggaagag gaagaagagg aggatgaaga tgaggataca gaggaagagg aggaagagga
      901 tgctgaagac acggatgtgg atgactggca gcctgaccca cccaggcctt ttgatcccca
      961 tgatttgtgg tgtgaggagt gtaacaatgc acattcttct gtgtgcccaa agcatggccc
     1021 cttgcatcca atccctaacc ggcctgtgct cacccgggca agagccagtc tgcctctggt
     1081 cctctacata gataggttcc ttgggggagt gttctccaaa agacggattc ccaagcgcac
     1141 ccagtttggc ccagtggagg ggccactggt caggggatca gagctgaaag actgctacat
     1201 ccatctcaag gtttctcttg ataaaggaga cagaaaagac agggatttgc atgaagacct
     1261 gtggtttgag ttgtctgatg agaccctttg taactggatg atgtttgtgc gcccagccca
     1321 gaaccaccta gaacagaacc tggtagctta ccaatatggc caccatgtgt attatacaac
     1381 aataaagaat gtggagccca agcaggaact gaaggtgtgg tatgctgcat cctatgccga
     1441 gttcgtgaat cagaaaatcc acgacatatc tgaagaagaa aggaaagttc ttcgagagca
     1501 agagaagaat tggccatgct atgagtgcaa ccggcggttt atcagctcag agcaactaca
     1561 acagcacctc aattctcacg atgagaagct agatgtgttt accagaacaa gaggcagagg
     1621 aaggggtcga ggcaagagga gatttggccc tggccggcgg cctggacgtc ctccaaaatt
     1681 tatccgtttg gaaatcacca gtgaaaatgg ggaaaagagt gacgatggaa cacaggactt
     1741 gctgcatttc cccgaaaagg agcagtttga tgaggctgag ccagctgctc tgaacggact
     1801 agatcagcca gaacaagcgt ccatcccagt tcctcagctg ccacaggaaa ccccgacttc
     1861 tctggagcag gaaccagaaa ctcacacctt gcacctgcag ccacagcaag aagagagcct
     1921 agtgcctacc cagaccactt tgacagccga tgacatgcgc agagccaaac gcatccgact
     1981 ggagctgcag aatgcagctc ttcagcatct gtttatccgg aagtccttcc ggccttttaa
     2041 atgtctgcag tgtgggaagg ccttccggga aaaggacaaa ctggaccaac acttgcgctt
     2101 ccacgggcgg gaggggaact gcccgttgac ctgtgatctc tgtaacaagg gcttcatcag
     2161 cagcgcctcc ttggagagcc acatgaagct ccattcggac cagaagactt actcttgcat
     2221 tttttgccca gaatcctttg accgccttga tttgttgaaa gatcatgtgg ccattcatgt
     2281 caatgatggc tacttcacct gcccaacttg taagaaacgg ttcccagatt ttatccaggt
     2341 gaaaaagcat gtgcgaagct tccactcgga aaagatctac cagtgtacag agtgtgacaa
     2401 ggccttctgt cgccctgaca aactgagact gcacatgctc cggcattccg accgcaagga
     2461 cttcctgtgt tccacctgcg ggaagcagtt taagcgaaaa gacaaactcc gggagcacat
     2521 gcaaaggatg cataaccctg aaagggaggc caagaaagct gaccgcatca gccgttccaa
     2581 gaccttcaag ccccgaatca catccacaga ctacgacagc ttcacgttca agtgccgcct
     2641 gtgcatgatg ggcttccgga ggcgaggcat gctggtgaat cacttatcaa agaggcatcc
     2701 agacatgaag atagaagagg tgcctgagtt aaccctcccc atcataaaac ccaatcgaga
     2761 ttacttctgt cagtattgtg ataaggttta taagagtgcc agcaagcgca aagcccacat
     2821 tctgaagaac catccaggag cggaactccc accaagcatt cggaaacttc gtcctgctgg
     2881 ccctggagag cctgacccta tgctgagcac ccacacccag ctgacgggta ccattgccac
     2941 ccctcctgtc tgctgcccac actgctccaa gcagtatagc agcaagacca agatggtgca
     3001 gcacattcga aagaagcacc cagagtatgc ccagcttccc aacaccatcc acacgccact
     3061 gacaacagct gtgatcagcg ccaccccagc tgtcttaacg acagatagtg ccactggaga
     3121 gactgtggtg acaacagacc tgctaactca ggcgatgacg gaactatccc agaccttaac
     3181 aacggattac cgaacacctc agggggacta ccaaaggatt cagtatatcc ctgtgtctca
     3241 gtcagcgtct ggtctgcagc aacctcagca catacagctg caagtggtgc aggtggctcc
     3301 ggccacttcc ccgcatcagt cccagcagtc cacagtggat gttggccagc tgcatgatcc
     3361 tcagacctac acgcagcatg ccatccaggt gcagcacatc caggtcacag agcccacccc
     3421 cacagctcca tcagcatccc aggtagcagg gcagccattg agcccctctg ctcagccggt
     3481 ccagcagggg ctcagcccct cccatatcca aggcagttct tccactcaag ggcaggctct
     3541 acagcagcag cagaattcct ctgtacaaca cacatacctc cccaatgctt ggaactcctt
     3601 ccgtggttat tcgtcagaaa ttcaaatgat gacactgcct ccaggtcagt ttgtgatcac
     3661 agacagtggt gtggcaaccc ctgttacatc tgggcaagtg aaagcagtga cttcgggtca
     3721 ttatgtatta tcagaaagtc aaccagaatt ggaggaaaag caagcctctg ctctctccgg
     3781 agcagtccaa gttcagccgt ctgcacacag tgactccctg gactccacaa gccccagcca
     3841 acagcagacc acccagtaca tcatcacaac caccaccaat gggaatgggg gcagcgaagt
     3901 gcacatcacc aagccgtagc cttcatcccc tggctggagg ccagagttca cgccacagtt
     3961 tctcatttgg aatctgaagc tccaaacacc tcaacctctt tttaaagact tattactctc
     4021 tcaagagttt gggaactgca gttttgacac acatagacca agggtgattt ctgccaaggt
     4081 catctttact cgattgactc gtcccaccct tgggatttct gctacggaat gcagttcttt
     4141 ctggggaaag ttaacttcca gatggagaaa cttgcgcctt gctcttgagc tggttgtttt
     4201 gtttttgttt ttgtttctga acacactgac aagccttact tccctttgtg gacatactca
     4261 gtggctagta ttatgttcgt accaaagggt ggagacaagt tgtaccaagt ccatggccac
     4321 tggacatctg aaacccaagc tatggcgtca aaagagaagg aacatttctt tcctgggtgt
     4381 gattaggtca ggaccgctgt ctctcatgca gtggagtttt cagtaatttt aacaaaggca
     4441 gcctattgga tggaaaaatt aaaataagat aaagatttga aggtggtctt ctgagcgaaa
     4501 aactgttctc tctctctctc tctctctctc tctctctctc tctctctctc tcgtctcagt
     4561 ctcactctgc tactctgctg cccaggatag ccctgagctc atgggctcat gggatcctcc
     4621 tgccttagtt tcccaagtag ctgggactac ggtcagcact gtcatggcag ttgtgtttaa
     4681 actctcttgt ttcggaaaac ctactgggca gtagcaggac tccccacaga tgctgacccc
     4741 aggcagacct ggcctcatat tccacaagca cagacagact ccctggaaga caaaaggttg
     4801 catggtctca gcaggatttg agcccctttg ttaacgctct gcttccaggc ttctggttat
     4861 atatagctgt gcttaagaag aagatatgtt ctacgaaaaa tatgtaaatt gtatatattt
     4921 gtgtgtgtgt gtgtatacac acacacacac acacacacac acacacacac acatacttat
     4981 ggagagaggg agagagagag aactgagacc ttgtcctgcc tcacaggatg tgaaggatga
     5041 gctccttact cagacactca taaactcagc tgcgtacgta tagcaccttt gtgtgtgatg
     5101 ctaggactca aacccagggc ctctgcatgc tgggcaggtt ccccaccact gagctacaac
     5161 tccggcccca cctcgcactc ttgttcacag cattgactgt attttagtac tttcagtgct
     5221 gtctgaaaag tgaagattct ttaaggttgt gtagaaaggc ggcctttctt tcttctaagc
     5281 attttaaact ttaagcctat tgcaactcac ccagaccttg atataagatg acctacttcc
     5341 cacttagggc aaacataaaa taaagggacc attgtagtag gctgaggtaa agggatgggt
     5401 gtgcagttag ttctgagagg aacgcagtcg tctgtgtgat agtggtcttc tctgtcttcc
     5461 tgttttcgag tcttgtttgc tgtgaatcta gtggggaagt gctgcccctc tttttactct
     5521 gcattccact tgtacccata agacatcttt aaagcctgta ttttaacaac ttttgtgaca
     5581 tatatttaaa aataattatt gtagagtgaa tttatcactc cagatcaggg agacctaagt
     5641 ttgtttcaaa tgaagttaac taatttattt tatttacatt tctaaggaaa aactgggtct
     5701 gtgatttaag aaatagagta acttctgggt ggtaaagagg ccttcctgaa aagtaatcct
     5761 ttggtttgaa gtcactttat ttattacgta gatcctacac tttcctcttg ggatctcatt
     5821 catagactat gtctgaagat tggggcctga aaagaacctg ggaaaattac ctcaaaaaat
     5881 gtgtggaaac tgaaaatgga ctctgtatct ttgccaacaa gaaaaggtta acaataattt
     5941 caacatgaaa tgttgactcc gtcacaaaat gcaagactct ggtccccaaa ttcctgtggt
     6001 gtaatgacta taactgtctc gggttctcca aaagtcatgt agtgttgtaa ctgtcccagg
     6061 gtctcatcca gagagccttg gaaggcgaag agcacgagac cacctctaag gtacagtttg
     6121 aggtttttgt gatttaaatt tgcgccgctg cagcagggtg tgggagtgaa cacctttaat
     6181 ccagcacttg gaaggctgct gcgggcctgc ctttcagttg gaggccactc ctacaaagag
     6241 ttcaaggaca gccagggcta cacactgaga gcccttgatt tgaaaagaaa actacacaag
     6301 taaataaata aatttgaccc aatggattct ctttaatgag agccagcagg ggtgtctccc
     6361 ctcttctcag gaataacgca gtgattaaaa caaagccaat cactggagga atgttggttt
     6421 tatgccagtt atttttaact tttaaaatac gcagaggaaa atactgttga aggacctctt
     6481 catctctttc tccttttttg ggtccttata tggagtaagt aaattccaga acataatact
     6541 atcactgttc taagatcagg tattttatga atttatcctg aggtgacaga ggagatggca
     6601 gagtataatc cctctgacaa cacactgtgg gaaacatgtg gccaatattt ctatggtggt
     6661 ctctccctcc cagtcacacg gacactgtag agtgtgctcg ttacagtggg gatgttttga
     6721 agtgggatgg atgtagaatt ttttttcttt tttacatttt tattgtttag tttgtaccca
     6781 gaaaaaaatg gttatttcat catgtaacat tcctattttt ctggaaagat tttctgtttt
     6841 gatgttcttg aattattttc tgacctggaa ttatcctttc aaaaaagaat tcttaaaata
     6901 tctagagcta aaaagaacct aatgagaagc tgaaactggc ccattggttg aaagcagtga
     6961 ttctatcttg ttatttaaat gtgaacattt actgtatatt cagtgagtta tagtgttaat
     7021 agtcttgtgc tacccagcag gtgtaaaaat taataaatat ttttttaata a
//
