LOCUS       XM_039087482            2566 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus photoreceptor disc component (Prcd),
            transcript variant X3, mRNA.
ACCESSION   XM_039087482
VERSION     XM_039087482.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2566
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2566
                     /gene="Prcd"
                     /note="photoreceptor disc component; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 11
                     ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 21 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:100912216"
                     /db_xref="RGD:6488422"
     CDS             1893..2054
                     /gene="Prcd"
                     /codon_start=1
                     /product="photoreceptor disk component PRCD isoform X1"
                     /protein_id="XP_038943410.1"
                     /db_xref="GeneID:100912216"
                     /db_xref="RGD:6488422"
                     /translation="MCTTLFLLSVAMLWRRRFTNRVEPEPSRVDGTVVGSSSETDFQA
                     TSREKEPVT"
ORIGIN      
        1 tgtgtgtgta tacccttaac gaagtaggga tctgactcaa agtcaaacac acccaggcat
       61 cgcctgcttt ggaggaactt gcagagaaat ctgggcttcc cctgtagccc tgccactcct
      121 gaactggaga ctgggccgag gcaccgttgt cagacgtagg gacctcaagt tctggcaggt
      181 ttcgagcgat gggtagtctc tcttcccatc tgctcttcca gctggccctt tgaacttgtg
      241 cacatgtcca gtctggggag ccagagtcct gtgccccact tccctcccca ccaatgcctc
      301 cccagcgagt cctgagtggc tagttaatga taggaccaga cactgtcctg aattatggcc
      361 ctggccttag tgaaatgaag ttccacagag aggcagtcag gcaggtatga tgggttggct
      421 ctgggcagct ggaagttctg agtaaggcac caggcagtga agacatttgt caccgttgag
      481 ggttcaattt gagaactgaa aggcagatcc ttcatctccg taggctgctc agggagaggt
      541 gacactggga cagaggggag gactgcagtc ttgagaaaac cagaaacctc atctgccatc
      601 agctgctcag gcctgcgcgg cagacagcag gacccctgag accacggagg cctagtccta
      661 acacagataa ttgggctgtc tctggctctc cccacgtccc caaggctgtt gcccaggaag
      721 tggttctccc cttcagcttt ggtccctgtt gatttaaaat ctttaaaggc atttgcccca
      781 caaatcttga cagtttgagt cccgtccctg ggacccacag ggtcgaagga aggaactgac
      841 tcctgcaagc tgccccaccc cccacaccaa caatttaaaa atctatagaa aatacagact
      901 tgaaggttca gtcacagagg gtaaataaga acctttgtag gccagcaggg ccctccctgc
      961 agctcagtgt tggggtgcct gatggaactc ctgggtggcg gcattacctc ccatcttgct
     1021 tagggaagga aagctgaagg tcctggagag ggtgggggca gtgtgggttc aggtcccaac
     1081 atcactcagc ccttgtccca gccccgtggt gctggctcca gctttcctgt cctgtccacc
     1141 aggaggtcca ggtgggatgt gcaaagaatg ttaatattga ttctcaacct ctcttctgac
     1201 tgccgtacct cataacttag gacgtattgg tatggtagtt tagtacataa ttgataagct
     1261 tataatttct atctaaatta tataaggttg ttatataaga tagaatttat agttctgtgt
     1321 gcacacctcg actctgcctt ttactgcaaa gggagtgtaa ttagaagagc tcagagggca
     1381 cgggggaggc ccggtgcaca cacacacaca ctcacatgca tgtacataca tgcacgggca
     1441 tgcacacgca tgctccgctc tctgtcccat catccattcc ttctcctctc tgccattctc
     1501 tcctgcctca gctcttctgc ctagtggcct gccagggaaa attgactacc tttcctgtcg
     1561 gcggcagagt tggctgaggg cccctccttc tctggcacct gcacgttcag acacctcctg
     1621 cggtagctcg ctctttctct cctgtatggg agactgaact tagggccttg gaaccccggg
     1681 cgagtactct gccgctgagc tttctcctca gacctctttg agagactctt cccaggctgg
     1741 cctccaatgc tctctgtagc tccgccaggc tttgaatgaa cttcaggaaa cacagcggtg
     1801 gcttgggaga ggcggcctgg ccattgtggg ccccctggcc tgtggccttc ttcagcaggg
     1861 ttggtcgtcg gtggggatgg ggcagctgaa ccatgtgcac caccctcttc ctgctcagcg
     1921 tggccatgct gtggcgccgt agatttacca accgagtcga accagagcct agcagagtgg
     1981 atgggacagt cgtgggcagc agctcggaaa cagactttca agctaccagc agggagaaag
     2041 aacctgtgac ataggccttc ccttcttcag gcagctcggc tttggggact gcaacccatc
     2101 agctctgaca gctcagtcct tgctggttca cctcccatcc caggaggatg ctgtgtggct
     2161 ggaggcagca gcaggaggga aagcaggaga agcagtcatg gagaagtcca tcttcacagg
     2221 gatttggctc ttgccctgaa gggagcctca cagattccag acggctgcac aagtcaaagc
     2281 atcacgcctc tacagtgtcc cagagccagg agagaggctg ttgtttttaa aggcaagaag
     2341 aattccccaa acttggccag aatcggagac aagatggagg gagaaccact ttccaggccg
     2401 gccaccgaca tgcccgcgta cagacacact tcctgtgaaa ccacggatgc agatgctcca
     2461 agcgtaagca gccagcgtct tggaggtttc accagccctc cttcctgatc ttgttaataa
     2521 aatccaaggt tccctttgca gtgaagaagg gaacaccaat actgta
//
