LOCUS       XM_006232169            4165 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus PRAME like, X-linked 2 (Pramex2),
            mRNA.
ACCESSION   XM_006232169
VERSION     XM_006232169.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006232169.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006232169.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4165
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4165
                     /gene="Pramex2"
                     /note="PRAME like, X-linked 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:503466"
                     /db_xref="RGD:1566159"
     CDS             312..1700
                     /gene="Pramex2"
                     /codon_start=1
                     /product="melanoma antigen preferentially expressed in
                     tumors-like"
                     /protein_id="XP_006232231.1"
                     /db_xref="GeneID:503466"
                     /db_xref="RGD:1566159"
                     /translation="MDLKDPASLLDLAMQCLLKNEPIIIQSLEEIPRELLIPLFCAAF
                     LGGHKKTLTAIVKVWPFFCLHVGKLRSHETHSALLKAMIDGLQVLPAPNSASRGSKLK
                     ILDLRQDANCRTTCFPIRTKSPFCFHSCSYTQTSSRKRKGKHSTVNLGSEVQLSRYPT
                     ELLVDLSLDGTLRTSTFLSLLLSKVEQSSGALHLCCRDLQVDKLSDYNNTLKLLNLLC
                     IDHLAVDQASLNDINTLLSQMVHLDSLSLSKITLTSLNAKIFKSFLTQLERMDNLQEL
                     NLSFFCLTNRLHKLLRVLPHDLDYLNLPFCELSYRDFRFLSQCPQAAHLKLLNLSNNP
                     ISWEDCEPLQTLMENVSGTLQHLEINHCLITDSTIFSLLPALSHCSHLRVLSFASNPI
                     TMSMLMRVLENLLPLMELKYVIYPIPVHCYERWYFQGTLDRQKLADVQVQLKAMLQAA
                     QRGDMNWITFSE"
ORIGIN      
        1 aaagacagtt ttgacttttg ttgaacataa acttaccaca gttcttgacc aagaggatgg
       61 aggatgcaat cagccgttct tgtacgttta agctataaaa gaaacctatc tttttaaagc
      121 ttggtatata ttttcaggat ttcttaagtg ttgtatatac tgggataata gttctaagaa
      181 gcttcaagta aatggaattc tttgcttttg agtaggatga ctttatctta gtcgacaagg
      241 tactctattg aagaacagtg tttagtttgt acgggcttct ataatacgga acaaagacta
      301 ggtttataaa gatggacctc aaggacccag cctcactgtt agatcttgct atgcagtgtc
      361 tactcaagaa cgagcctata ataatccagt cacttgagga gatcccgaga gaacttctca
      421 tcccattgtt ctgtgctgcc ttcttgggtg ggcataagaa gacactgacc gcaatcgtga
      481 aggtttggcc ttttttctgt ctccacgtcg gaaaattaag atcacatgaa acacacagtg
      541 cactcttaaa agccatgatt gacggtcttc aagttcttcc tgcccccaac tctgcttctc
      601 gaggctccaa actgaagatc ctggatttga ggcaggatgc taactgcaga accacgtgct
      661 ttccaatcag gaccaaatct cctttctgtt ttcactcttg ttcttacact caaacctctt
      721 cccgcaaaag aaaaggaaaa catagcactg taaatttagg atctgaggtt cagttgtcca
      781 gatatcctac tgaattacta gttgaccttt cccttgacgg taccttgaga acaagcacat
      841 ttttgtcttt gcttctgagt aaagttgaac agagctctgg ggccttacac ctctgctgcc
      901 gtgatttgca agttgataaa ctgtctgact acaacaatac cctgaaactt ctgaatctgt
      961 tgtgtattga tcacctggca gttgatcagg cttccttgaa tgatatcaac acccttttgt
     1021 ctcagatggt tcacctggac agtcttagtt tgtctaaaat caccctcaca tctctgaatg
     1081 cgaagatatt caaaagtttc ctcacacaac ttgagcgaat ggacaacctt caggagctaa
     1141 acttgtcttt tttctgccta acaaatcgtc tacacaaatt gctcagagtc ctgccacatg
     1201 atctggatta tttgaatttg cctttctgtg agctttctta ccgtgacttc agatttctgt
     1261 cccagtgtcc tcaggctgcc cacctcaagc tgctgaatct cagtaacaac ccaatatcgt
     1321 gggaagattg tgagccttta caaacgctta tggagaatgt ctctggtacc ctgcagcatc
     1381 tagagataaa tcactgtctt ataacagatt ctacaatatt ttctcttctc cctgccctca
     1441 gccactgttc ccacctccgt gtgcttagtt ttgcttctaa ccccattaca atgtccatgc
     1501 tcatgagagt cctggaaaac ttactaccac taatggagct gaaatacgtg atttacccta
     1561 tccctgtgca ttgctatgaa cgctggtatt ttcagggtac tttagaccga cagaagcttg
     1621 ctgatgtgca ggtccaactg aaggcgatgc tacaggccgc acagcggggt gacatgaact
     1681 ggattacttt ttcagagtga attgcacagt ccaaccaatt ttccacactg atatgtgccc
     1741 tttgagcact cagtgttctt tcatgaattc tacagatttc acatgtaaga ttcttatatt
     1801 gtaggaacta tagtcaggaa atatagacat gtaactgacc tttataaaga atcaccctaa
     1861 ctaaaaatgg aagagctgag agttcctttg agtcttttgt ccattgtcat taataacctt
     1921 cttactgaca aatatgatat ggatcagcag gtcatgatag cttataccca tatcctcact
     1981 gagattttct tttaggaact tggcaccaac agggtcaata taactttccc tggatgtatt
     2041 tgggaaggcc aggtgattat agaagccaat acttttatcc cttaagttgt attaaacttt
     2101 cacatttaag gctatcttta gtttcttaca ggaaatcttc tgtatttaac agtgggaaaa
     2161 agaatttata atcactaact attaatgtct tcaactgtaa gtggttacct cctctccttt
     2221 cctcagactg cagtgcctca gttctttact tcatactcat tggacaagga ttagtttcgg
     2281 atattattgt aggcagcaga atgaaaagac aagttcctgc ctgaagccat tcagaggctg
     2341 ggcatgtctc tgttttatct gttgtcagtg aacctagaaa gttgttttat gtgcttggac
     2401 cccacgcttc atcttcctca ttcttgacac atattctctt caatgcaaag tggacttcat
     2461 gatgttggat ctcttccgca gaattcaagg actcgatgtt atcatcttgg aggtattctt
     2521 acatctcttt gatgtctctc ttctgtcatt gtgcaaaatg cctgcaataa gagactggta
     2581 aggaagagaa ctttgcttcc ttgttttaga ctttcactaa ggtttttttg ctctgggact
     2641 ttggcaagac agaacatgat aaagaacttt ggcagaggga gatcctttca actcataagg
     2701 ccagggagca gagaggagaa acacagagag agcagagagt cctaacacag ccttcaggag
     2761 tttgatttca ctgatttgca gccttcaact agtctgctat aaagtttcta tcagctactc
     2821 tggagccgtt cttgaactag tctgctcaca actttcaact gcctgccttg gaaccatcag
     2881 cttgagacca gtatgaactg ggaaggacat ttaggagccc agtcacaaca ctgactgcta
     2941 ttcatttaca cagagccatt ttgtcttact gtaccatgta ggtttcctag tatacattgt
     3001 tctctttgaa tttcttgctg cttcctttct attatagttg ctctgttcat tgtgctttat
     3061 ttcagccaaa tatgtatatt gagtcctaaa tatttggtca atccaaaatg ttgtgtgcca
     3121 taaattgaaa tgccacatag tatatataaa ttgtggtaag aaacaaagga ttaatgattg
     3181 taatgttgat gtatttataa aggtaactag catactaggt tccttggaaa ttagaattta
     3241 gttgttaatc acatgttgaa atgttaacat tactaacact caataactta gtaaccaaac
     3301 aactgaaaat acacttgttc ctgctcagtg ttttattgtt gcaataaaat ggactgcgtt
     3361 ttaaatacgt agtaaggaag aaaaaatgag catgatgtgt ttctactctg aaaagttaac
     3421 attctggatt tcagagcaac tcaataaaat cattgttaaa attaattgga ttttaggcca
     3481 ttgggattgt gcaaaaagaa caattgctaa atttgagtac ttgaatgcca tggtggaaag
     3541 taagaaccta tttctaaggc ttgttctcca actttcacat gcattccatg ggtttgatgt
     3601 gactcaataa tcacatacac acttcacgtg cacatacaca cacacacaca cacacacaca
     3661 tacacagacc accaccccac caccaccacc accactacca ccacacatac acaatacata
     3721 catgatgtac atgatgcaca cagatataca caataataat aaattataat gaaaaataaa
     3781 ctgaacttta ttcataatac tcactgaaat aataaacaag aacaccagca aaaattaagt
     3841 tgcaaagtag taaaaaacca ttcacattaa ttctggttta ggtaataaga aattccattt
     3901 tcttgttagg aagaaaaatg ataaaacata attcatgtat agtttctttt ataacatggc
     3961 atttaataca ttgaataaaa atgtaaatta atgacttatt catttccctc ctattattta
     4021 tatagactgt gaaaagtatt aaaatgtcag tataacaagt aatagcttta tatggatttc
     4081 ttgttattag attactttta gcattttata ttaaaaaatg ttattaaata aaaatcctgg
     4141 aaggggggac aagaaagggg taaca
//
