LOCUS       XM_006232170            3735 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus preferentially expressed antigen in
            melanoma-like 3 (Pramel3), transcript variant X2, mRNA.
ACCESSION   XM_006232170
VERSION     XM_006232170.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006232170.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006232170.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3735
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3735
                     /gene="Pramel3"
                     /note="preferentially expressed antigen in melanoma-like
                     3; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 6 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:503465"
                     /db_xref="RGD:1564595"
     CDS             280..1668
                     /gene="Pramel3"
                     /codon_start=1
                     /product="melanoma antigen preferentially expressed in
                     tumors-like"
                     /protein_id="XP_006232232.1"
                     /db_xref="GeneID:503465"
                     /db_xref="RGD:1564595"
                     /translation="MDTKEPRTLLDLAIQCLLSNEHLAIQALEEIPRELFVPLFTAAF
                     TGKHKNTLTSMVKIWPFTCLHIGALSVQESQRELLKAMVESLQFLPAPNSASRCPKLR
                     ILDLRQDAGCKTTCPDIINKSTICFHSCAYSEHSIFKMELQENPSSPESEAQPSKVPM
                     ELLVDLSLDGTLRESDFFAFLLNKIKQSLGSLHLCCRDLQINNLCECRNSLRHLDLKC
                     VDHLAVDQASLSEVTTLLSHVIQLDRLSLSKITCRSLNGRTFRNFITQLRRMDHLKEL
                     NLSSFCLTDHLESVLRVLPASLDFLYLPFCGLSYSDFKFLSECPQANHLKLLNISNNP
                     MYWEDCEPFYHLLQNISGTLQHLAINHCLLTDSTISVLIPALTRCSYLRVFSFSSNPI
                     TMPMLMRILELLAPLMALKYVIYPIPVHCYGRWHFQGSLDRQKLMEVQTQLKLMLQEV
                     ERSDMNWITYSD"
ORIGIN      
        1 ggaacagttg ccgttaagac tatggcgccc ccgccgtggg gatagcctct cagacaatga
       61 ggggctgcca aagttgagaa aatgggaagt ccgaggactt aactacttag ttcttcatat
      121 atcccgtaat ctcttcttca aaaaactata ttcctgagaa gaacttggtg acttttcaac
      181 ggctgtggtt ggagccaact gagggtttac tttggatttc ctcatcttta ttaacttgca
      241 tattggcgct gatccctgat caataaaagg ttaattaaga tggacaccaa ggaaccgcgc
      301 acattgttgg atcttgctat acagtgtctg ctgagtaatg agcatctagc aattcaagct
      361 ctggaagaaa tcccaaggga gctttttgtt cctttgttca ctgctgcctt tactggtaaa
      421 cacaaaaata cactgacatc aatggtgaaa atttggccct ttacctgtct ccacattggg
      481 gcattaagtg tgcaagaatc ccagcgtgaa ctcctgaaag ccatggttga gagtcttcag
      541 ttcctccctg ccccaaactc ggcttctagg tgccctaaac tgaggatcct agatttaagg
      601 caggatgctg gctgcaagac cacatgtcct gacatcatca ataagtcaac aatttgcttc
      661 cattcttgtg cttactctga gcactctatc tttaaaatgg aactccagga gaatccttca
      721 agtccagagt ctgaggccca gccctccaag gtgcctatgg aattactagt ggacctttcc
      781 cttgatggta ccttgaggga aagtgatttt tttgcttttc ttctgaataa aataaaacag
      841 agcctaggct ctctgcacct atgctgcaga gatttgcaaa ttaataattt atgtgaatgc
      901 agaaattcat tacgccacct ggacctgaaa tgtgtggatc acctggcagt tgatcaggct
      961 tctcttagtg aagtcactac ccttttgtct catgtgatac aactggacag acttagtctg
     1021 tctaaaatca cttgtagatc tttgaatggg agaaccttta gaaattttat cacccagctg
     1081 aggcgtatgg atcacctgaa ggagctcaac ttgtcttcgt tctgtctcac agatcatctt
     1141 gaaagtgtcc tgagagtcct acctgctagt ttggatttct tgtatctgcc attctgtgga
     1201 ctttcttaca gcgacttcaa gtttctgtct gagtgccctc aagccaacca tttaaagctg
     1261 ctgaatatca gcaacaaccc aatgtattgg gaagactgcg agccgtttta ccatctcctg
     1321 cagaatatct ctggcacctt acagcacctg gcaattaatc attgcctttt aacagattct
     1381 acgatctctg ttcttattcc agccctaact cgctgttctt atctccgagt gtttagcttt
     1441 tcttcgaatc caattactat gcctatgctc atgagaattc ttgagctctt agcaccattg
     1501 atggcactta aatatgtaat ttatccaatt cctgtgcact gctatgggag gtggcatttt
     1561 caaggcagtt tagatcggca gaagcttatg gaggtgcaga cacaattgaa attaatgcta
     1621 caggaagtag aaaggagcga catgaattgg atcacttact ctgattaaat tacacagtcc
     1681 aacaaagttt caacttgata tgtccccttt aagtactatt ttttcttaat cccatagaca
     1741 gaatatgtaa agtagttaag ttgtaggaaa atatagttaa gaagtatagg tatgtaactg
     1801 atttctacag agaataactt acaagaagag tgaggacttt gagagtacct tgagtctctt
     1861 aactattctt catagtattt catcttacca actaaaattt taggtagagg gtatggaaag
     1921 attatgtcac gaataccaac accctgtcct cactgagatt tacctacaga cacgtaatac
     1981 cagttgtgac aatctaacct ttcctggatg tgtttttgga ggcaggtgga tatttaagcc
     2041 aacttaataa gttgtattaa tgccatctct atttaatgcc atcttcagtt gttcatagga
     2101 gaccatctgg atttaacagt gaggaaaaat atataactgc tatcattaag tggcttaatt
     2161 tttacttcat actcattgga caaggattag tttctgatat tattgtaggc agcagaatga
     2221 aaagacaagt tcctgcctga agccattcag aggctgggca tgtctctgtt ttatctgttg
     2281 tcagtgaacc tagaaagttg ttttatgtgc ttggacccca cgcttcatct tcctcattct
     2341 tgacacatat tctcttcaat gcaaagtgga cttcgtgatg ttggatctct tccgcagaat
     2401 tcaaggactc gatgttacca tcttggaggt attcttacat ctctttgatg tctctcttct
     2461 gtcatcatgc aaaatgcctg caataagaga ctggtaagga agagaacttt gcttccttgt
     2521 tttagacttt cactaaggtt tttttgctct gggactttgg caagacagaa catgataaag
     2581 aactttggca gagggagatc ctttcaactc ataaggccag ggagcagaga ggagaaaccg
     2641 gagtcctaac acagccttca ggagtttgat tacactgatt tgcagccttc aactagtctg
     2701 ctataaagtt tctatcagct actctggagc cgttcttgaa ctagtctgct cacaacttac
     2761 aactacctgc cttggaacca tcagcttgag accagtatga actgggaagg acatttagga
     2821 gccaagccac aacacttacc attcttcctt tagatattat tttttcttag ccactagtac
     2881 tttcatggta tacctgattc agtttgaata ttctgctgat tcttttctgt tgaagattct
     2941 actattgcta taatattgtg tagcaaactc atgcatgaag ttgtttatat gtaaaactcc
     3001 aaatatgatt accataaaaa gaaaagtttg ttgctcgcac aagatatagt gtgaggaagc
     3061 atataaacct attaattagg atgcagtttt gttaatgcat tgaaaagtta atacactgca
     3121 ttgcaaaaac atagaaaatg tgcaaaaaaa tttagttttt cttgtcacat cttgaaatgt
     3181 caacagcact gctttttaat gacatacaag atacaagttt aatgaaaaat catttatgca
     3241 gtttttataa ataaacctaa ctgcattttt aaaatctaat aaaaaaatca taagcaacaa
     3301 tgtgtctaaa ttgcttccag tttgaaatta taatatactg gatttcagag caactaagta
     3361 atactatggt tgaaagctac agaatttagt ttacagttct cacatttcaa gttaatactg
     3421 gactatattt tagagataca aaacactaaa attaatcttg aaaattaaca tttgtattgg
     3481 ttacatttat gtgttaaaag attatcagat tcaagaagaa atttaaaagc aacgtagaaa
     3541 attctgggat ataattgtta gcaaaacatt tgaaagactt aaaaacaaga atgagaatta
     3601 atggcatttg tgtctttcat attacttata tgttaaaaca cagaatttaa aagattcatt
     3661 aaaatgtcaa tgtaaccaga tgttattgct tccttgttaa catcacatta ttttgtcatc
     3721 ttttattaaa taaaa
//
