LOCUS       NM_001419568            3606 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus preferentially expressed antigen in melanoma-like
            (Pramel), mRNA.
ACCESSION   NM_001419568 XM_039099992
VERSION     NM_001419568.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3606)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            On Apr 11, 2023 this sequence version replaced XM_039099992.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.32916.1,
                                           SRR26360186.1652284.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on manual assertion, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-249               JAXUCZ010000021.1  102744421-102744669
            250-312             JAXUCZ010000021.1  102744773-102744835
            313-402             JAXUCZ010000021.1  102746240-102746329
            403-458             JAXUCZ010000021.1  102747746-102747801
            459-556             JAXUCZ010000021.1  102752857-102752954
            557-856             JAXUCZ010000021.1  102775826-102776125
            857-1438            JAXUCZ010000021.1  102776563-102777144
            1439-3606           JAXUCZ010000021.1  102778053-102780220
FEATURES             Location/Qualifiers
     source          1..3606
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq32"
     gene            1..3606
                     /gene="Pramel"
                     /gene_synonym="RGD1561307"
                     /note="preferentially expressed antigen in melanoma-like"
                     /db_xref="GeneID:503464"
                     /db_xref="RGD:1561307"
     exon            1..249
                     /gene="Pramel"
                     /gene_synonym="RGD1561307"
                     /inference="alignment:Splign:2.1.0"
     exon            250..312
                     /gene="Pramel"
                     /gene_synonym="RGD1561307"
                     /inference="alignment:Splign:2.1.0"
     exon            313..402
                     /gene="Pramel"
                     /gene_synonym="RGD1561307"
                     /inference="alignment:Splign:2.1.0"
     exon            403..458
                     /gene="Pramel"
                     /gene_synonym="RGD1561307"
                     /inference="alignment:Splign:2.1.0"
     exon            459..556
                     /gene="Pramel"
                     /gene_synonym="RGD1561307"
                     /inference="alignment:Splign:2.1.0"
     exon            557..856
                     /gene="Pramel"
                     /gene_synonym="RGD1561307"
                     /inference="alignment:Splign:2.1.0"
     CDS             567..1952
                     /gene="Pramel"
                     /gene_synonym="RGD1561307"
                     /note="leucine-rich repeat-containing protein PRAME-like;
                     melanoma antigen preferentially expressed in tumors-like"
                     /codon_start=1
                     /product="uncharacterized protein LOC503464"
                     /protein_id="NP_001406497.1"
                     /db_xref="GeneID:503464"
                     /db_xref="RGD:1561307"
                     /translation="MDVKTPNKLLELAIHSLLNEESAAIQALEEIPRELFVPLFIAAF
                     EGGHKNVLSAMVKVWPYYCLHIGSLSIQEPQHELLKAMIENLPVYPAPSSSSRGPKLR
                     ILDLRQDTDCRITCPEVSTKTPSCFYSCAYSDRSITKIERQLCCVNAECKTLLPRPVE
                     LLVDLSLDGSLMEKEFLVLLMYKIEESLGSLHVCCRDLQIDKLCKCKCTLKFLDLKCI
                     DQLSVDRGSLSDITSILCRMIHLESLSLSNVTFRSLSGKVFKIFLSHLQRMEHLKELS
                     LSSFCLKNHLDRVLRILPPGLDFLYLPFCDLSYRDFKFMSQSPQVTHLKLLNLSNNPM
                     YWGDFEPFHTVLINLSGTLQHLEINHCLISDSAMSALIPALIRCTRLRVLGFASNPIS
                     MPMLVNIMHNLTPMKELKYVIYPIPVHCYERWHFQGSLDRQKLAIVQLQLKAMLELAH
                     REDMNWITYCE"
     exon            857..1438
                     /gene="Pramel"
                     /gene_synonym="RGD1561307"
                     /inference="alignment:Splign:2.1.0"
     exon            1439..3606
                     /gene="Pramel"
                     /gene_synonym="RGD1561307"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagaatcccc cagttactgc gctaagttta aaaaggaact gttggggtcc tcaaaggggc
       61 ttttgagtcc tcagaggggc ttttcagtcc tcagaggggc ttttgaggac cctgcgtcgt
      121 cttgcactcg cacgcctctc acacgctctc gcggctttca gcgtttgagg aactctctcg
      181 tcaataagcc gctgttgtgc tacagaggtg ccggaaaagt cagtagattc ttcctaccct
      241 tccactgagg ttccgccttg tttgctcgag gcgtcaattt tgtggtagtg tctagaggca
      301 ttgtctcctg agaatcccat tcagaagact tcactgaatt tagttgttat ttctctgtag
      361 ttccagtctg tggtataagt ctgaaacatt tcaagagtac tgtgaagaaa ttgaagaaga
      421 cagtagaaaa gggaaagatc tcctacatag gagaaccata gagcatctgt gagaggaagg
      481 aagctgctgc aacctaaggc cttcgtggac ctgtaactca ggattctggt ttcatcagcc
      541 ttgacccata cagaaggttc acaaagatgg atgtaaagac cccaaacaaa ctgttggagc
      601 ttgctataca tagtctactc aatgaggagt ctgcagcaat ccaagctctg gaggagattc
      661 caagagagct ttttgttccg ttgttcattg ctgcctttga gggtgggcat aagaatgtat
      721 tgagtgctat ggttaaagtt tggccctatt actgtctcca tattgggtca ttaagcatac
      781 aggagcctca acatgaactc ctaaaagcca tgattgagaa tcttccagta tatcctgcac
      841 cgtcctcttc ttctcgggga cctaaattga ggatcctaga tttaaggcaa gacactgact
      901 gtaggatcac atgccctgaa gtcagcacca aaacaccttc ctgtttttat tcttgtgctt
      961 attctgaccg ctctatcaca aaaatagaaa ggcagctttg ttgtgtaaat gcagagtgta
     1021 agactctctt accaaggcct gtagaactac tagtggatct ttccctcgat ggctccttaa
     1081 tggaaaagga atttttggtt ttgcttatgt acaaaattga ggagagttta gggtctttgc
     1141 atgtgtgctg ccgagatttg caaattgata aattgtgtaa atgcaaatgc acactgaaat
     1201 ttcttgatct caaatgtatt gatcaattgt cagttgatag gggctcactg agtgatatca
     1261 ccagcatcct gtgtcggatg atccacctag aaagccttag tctgtctaat gtcactttta
     1321 gatctctgag tggtaaagtc tttaagattt ttctcagtca cttgcagcgt atggaacacc
     1381 ttaaggaact cagcttgtct tcattctgcc tcaaaaatca tctggacaga gttctcagaa
     1441 tcttaccacc tggtttggat ttcttgtatc tgccattctg tgatctttcg tacagagact
     1501 tcaaatttat gtcccagagt cctcaggtca cccacctaaa gctactaaat cttagtaaca
     1561 acccaatgta ttggggtgac tttgagccct ttcacactgt tctgataaat ctctctggta
     1621 ctcttcagca tctagagata aaccattgcc ttataagtga ttctgcaatg tctgctctta
     1681 ttcctgccct aattagatgt acccgtctcc gtgtgctggg ctttgcttct aaccccatct
     1741 caatgcctat gcttgtgaat atcatgcata atttaacacc catgaaggag ctaaaatatg
     1801 tgatttaccc tattcctgta cattgctatg aaagatggca ttttcagggc agtttagaca
     1861 gacagaaact tgccattgta cagctacaac tgaaagcaat gctagagctt gcacatagag
     1921 aggacatgaa ctggatcact tactgcgagt aaatttcaca gtccaacaca gtgttaatct
     1981 gacatgtacc attaaagtac taatgttatt tcctagaccc gtagacttga tctttaaggt
     2041 tcttacgttg tacagaattg cacttaggaa ggatagtgca taacttagca aaaactgaag
     2101 gacttcaaga gtttcttgtc actattgaca gattactgac aatagtagct tttatatttt
     2161 tataagatga tcaattcctg ctatgctgta tccctgtcca tactctttgg tatgcttgtg
     2221 ggcacacaca taaatcaaca caatgacagc ctttcctgtc tgtgtttgta aaaaagggca
     2281 gtgggttttg aagacagtcc tttcatccca taagtcactt taggctgttt tgggttgctt
     2341 atgggaaact atcaggattt aacagtagtt tgggaaagaa tgtagtagag gccctgagat
     2401 ttcaatatac ccctcaagaa cataaataca atgacctact tccttgaggt aggcccactg
     2461 tgaaatttcc accactcacc atgaagtgtt cagctgggta tccagccttc ttcccataaa
     2521 ttttgtggtg gcatttagaa tccttgccac aatatttctc ctacttcctc tagttctctt
     2581 aacactgtat atttacttag ttgtgtaaat cgttccctta tatatatttg gcttctgtat
     2641 ttttttccaa taacggtgcc tcatttggta tgatacattc tagccacatg ggaatactca
     2701 gggccggctt acttcattct ccaaaatatg acataactaa aaattcagtt tgtgtattct
     2761 agacttaatt agaaacgatg tatgccacag caataattag caatttacac agagctcagg
     2821 aaatgcctta tccatccagt tgcttaccac acaggctcac caatgctcag atgcctggca
     2881 tatgtgtaaa aagtttagca ccaaagtgta catttgtaac tctggtgctg aaaaggtaga
     2941 ggaatgatga accttagtta catggccaaa cagtctaaca aattagtgcc ttctaagtgc
     3001 aatgagagat cctgcctcag aaaatatgtg tagaagtgtt taagaaaata ccagatgcca
     3061 acatccagct cctgcttgca tatacacaag catacgcatc ttctcccaca catgaacatg
     3121 gaaacaataa ggtcttactt gtattgttaa cttcttgata cgggagactg cattgcaaag
     3181 gcatggtaaa ggtaaaaaat gagcacttgt ccctttcaca tactaaaatg ccaaaacgat
     3241 gacatttcaa tgacccagta acagaaagaa cagaagtaac aacttacaca taatgttttt
     3301 ctgttgaaat aactgtcaag gtagttaaca ttttaaattg attttctttg ggtggtaaga
     3361 gattgtattt ccaagttagt aagaaaaaca tgctaacatg ctataattcg tgtgtcatat
     3421 ttctcttgtg atatacttca aatttgttca tatattttgt aatgcttgtg tcattgtata
     3481 gtgcacaaaa tttaaagatc tattaaaatg ccaatgtaat gtgcaatttt ccttacattg
     3541 tttccaagtt aaaaattaca gattttggca atttgtatta aataaaatgt tatttaaatt
     3601 aggctt
//
