LOCUS       XM_006238356            1461 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus PRAME family member 5 (Pramef5), mRNA.
ACCESSION   XM_006238356
VERSION     XM_006238356.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006238356.4.
            
            On Jul 26, 2016 this sequence version replaced XM_006238356.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 5% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1461
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1461
                     /gene="Pramef5"
                     /note="PRAME family member 5; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 7
                     Proteins, and 10% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:298613"
                     /db_xref="RGD:1587378"
     CDS             25..1461
                     /gene="Pramef5"
                     /codon_start=1
                     /product="PRAME family member 8-like"
                     /protein_id="XP_006238418.1"
                     /db_xref="GeneID:298613"
                     /db_xref="RGD:1587378"
                     /translation="MNFNTPPTLLELGRRSLLQDEALTVSALQELPLELFPALFKDAF
                     SSEQSIILRHMVVAWPFPCLPVGALMRTPHLETLKAVLGGLDLLLAQKVQPGRCKLQV
                     LDLRDVNHNFWNVWTGMEDGVFSPDISHPQSLIYHPIQKGKQAVTVWINLSVNPRHSS
                     KYNEYFYQWAKERKDVVQVNCQKIEFWTNPFYDPCLLDIVEPSSIQELEVYEHWDLET
                     LAMLAPDLGQMINLQRLLLHNIHISLNWLGNKEVEDYYVRMIIPLFSKLDKLQHLYLN
                     DVCFVNEHLDQVLGCLNSPLETLVITRCKLSELDMSHLSQCPRVHQLKHLDLSGVDFI
                     NLSHEFLARLLKRLTATMQKLKLKSCMITDFQMDVLLPALSQCSQLTEVDFLMNFLSM
                     DILKKLLQHTANLRQLTKEMYPAPCEVYDEFGNVLPHRFQQHCSDLMGTLKVIRQPKE
                     ICFMSNICAGCGEYSVYNLEAVLCSCWQ"
ORIGIN      
        1 gcatctccct acctgaaagc cacgatgaac ttcaacacac cacccacact tctggagctg
       61 ggaagaagaa gcctgctgca agatgaagcc ttgaccgtct cagctctgca ggaacttccc
      121 ttggagctct tcccagcact cttcaaggat gcgttcagca gtgaacaaag tatcatcctg
      181 aggcatatgg tggtagcctg gcccttccca tgccttcctg tgggagcgct gatgaggaca
      241 cctcatctag agaccttgaa ggctgtgctg ggtggcctgg atttgctgtt ggcacaaaag
      301 gttcaaccag ggaggtgcaa gctacaagtg cttgatttac gagatgtcaa ccacaatttc
      361 tggaatgtgt ggactggaat ggaggatggc gtcttctctc cagatattag ccatccacaa
      421 tcattgattt atcatcccat acaaaaggga aaacaggcag tgaccgtgtg gataaacctt
      481 tctgtaaatc ccaggcattc aagtaaatac aatgaatatt tttatcagtg ggcaaaggag
      541 agaaaagatg tagtacaggt gaactgtcag aagatagaat tttggaccaa ccctttctac
      601 gacccatgtc ttttggatat agttgagcca agttctatcc aggaattgga agtgtatgaa
      661 cactgggacc tggaaaccct tgcaatgtta gcccctgacc tgggccagat gataaacctt
      721 caaagactcc ttctccataa tatccacata tctttgaatt ggcttggaaa taaagaggtg
      781 gaagattatt atgtaagaat gatcattccc cttttctcta aactcgacaa gctccagcat
      841 ctctatttga atgatgtctg ctttgtgaat gaacacctgg accaagtgct cgggtgctta
      901 aacagtccct tggagaccct tgtaatcact cgctgcaagt tgtcagagtt agatatgagt
      961 catctctccc agtgtccaag agtccatcag ctcaagcacc tggatctgag tggcgttgac
     1021 tttataaatt taagtcatga atttctagca agacttctaa aaagattgac agctacaatg
     1081 cagaagttaa aattgaagag ttgtatgatc acggatttcc aaatggatgt cctcctgcct
     1141 gctctgagcc aatgctccca gctcactgag gttgattttc tgatgaactt cttatctatg
     1201 gacatcctga agaagctgct acagcacact gccaacctga gacagcttac caaagaaatg
     1261 taccctgccc cctgtgaggt ctatgatgaa tttggtaatg ttctcccaca ccgatttcaa
     1321 caacattgtt cggatcttat gggcacactc aaggttataa ggcagccaaa agagatctgc
     1381 tttatgagta acatttgtgc agggtgtgga gaatactctg tctacaactt ggaggccgtg
     1441 ctatgttcct gttggcaatg a
//
