LOCUS       NM_001109617            2674 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus PRAME family member 27 (Pramef27), mRNA.
ACCESSION   NM_001109617 XM_001076664
VERSION     NM_001109617.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2674)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473968.1.
            
            On Oct 4, 2007 this sequence version replaced XM_001076664.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383,
                              SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2674
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..2674
                     /gene="Pramef27"
                     /gene_synonym="Pramel1"
                     /note="PRAME family member 27"
                     /db_xref="GeneID:691051"
                     /db_xref="RGD:1588644"
     exon            1..330
                     /gene="Pramef27"
                     /gene_synonym="Pramel1"
                     /inference="alignment:Splign:2.1.0"
     CDS             38..1414
                     /gene="Pramef27"
                     /gene_synonym="Pramel1"
                     /note="preferentially expressed antigen in melanoma-like
                     1; PRAME family member 18-like; PRAME family member
                     19-like"
                     /codon_start=1
                     /product="PRAME family member 27"
                     /protein_id="NP_001103087.1"
                     /db_xref="GeneID:691051"
                     /db_xref="RGD:1588644"
                     /translation="MSCKTPPVLQELAEDSLLKNQALAVAALDDLPSLFFPSLFKKAC
                     RHRLVGIIKAMVQAWPFPCLPLGAMVSRKTAYRRILEIVLYGFDALLFQEVPHRRCKL
                     KVLDLRVMPLKLWNRLPVFGTAGCSENPAVLGHSGTRVKQPVKVLVDMVLKESPLDST
                     EAFLVQWVDSRSGLVKLCCCKLQIWAMSIYYHRKLLEILDLDSIQELRVYCISNPVCL
                     LNFAPYLGRMRNLRCLILSHLWQAFSMTPVEKQQVITQFTSQFLKLKCLQILHLDTVF
                     FLEGHLDELFWWLKTPLETLSVIDCNLSKSDWIHISEFQCTSQLKHLNLKWVKLTHLS
                     PEPLRILLLKSASTLISLDLEGCQMMDSQLSAILPALRCCTQLTKFNFHGNYISMPIL
                     RELAHNVVKQKSHPSKIHFIPSCDHHSGLDFEVISQPHIVFVDVERTTGQQEQVLFYA
                     VCSGEYVL"
     exon            331..897
                     /gene="Pramef27"
                     /gene_synonym="Pramel1"
                     /inference="alignment:Splign:2.1.0"
     exon            898..2674
                     /gene="Pramef27"
                     /gene_synonym="Pramel1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccccaggaat cctcttcccg aagattgatc cgtcaggatg agctgcaaga ccccacctgt
       61 actccaggag ctggcagagg acagcctcct gaaaaaccag gccttggctg tcgccgctct
      121 ggatgacctg ccctcacttt tcttcccgtc gctgttcaaa aaggcctgca gacacagact
      181 ggttgggatc atcaaggcga tggtgcaggc ttggcccttc ccctgccttc cactgggggc
      241 catggtcagt aggaagactg cctaccggag aatcttagag attgtcctgt atggcttcga
      301 tgctttgctt ttccaggaag ttccccacag gaggtgcaag ctgaaagtgc tggatttacg
      361 ggtcatgcct ttgaagctgt ggaacaggtt gcccgtgttc gggactgctg gctgtagtga
      421 gaatccagca gtgctgggcc attcaggaac acgggtgaaa cagccagtga aggtgctggt
      481 agacatggtc ctcaaggaga gcccgctaga ttccacggag gccttcctcg ttcaatgggt
      541 agacagcagg agtggtttgg tgaagctgtg ctgttgcaag ctgcagatct gggcaatgtc
      601 catttactac catcggaaac tcttggagat cttggatctg gactctatcc aggagctgcg
      661 tgtatactgc atcagcaatc ccgtctgcct gctaaacttc gccccttacc tgggccgcat
      721 gaggaacctg cgctgtctca ttctctctca cctctggcag gccttctcca tgactccagt
      781 ggagaagcag caggtcatca cccagttcac ctctcagttc cttaaactga aatgcctcca
      841 gatcctgcat ctggacactg tcttcttcct agagggccat ctggatgagc tattctggtg
      901 gctaaagaca cccttagaga ccctgtcagt gattgattgt aatctctcaa aatcagactg
      961 gatccatata tccgagttcc agtgcacaag tcagctaaaa cacctgaatt tgaaatgggt
     1021 caaactcacc catttgagcc cagagcccct gagaattctg ttactgaaat ctgcatctac
     1081 cctgatttcc ctggatttgg agggctgtca aatgatggac tcccagctca gtgccatcct
     1141 acctgccctg agatgctgta cacagctcac caagtttaat ttccacggga actacatctc
     1201 catgcctatc ctgagggaac tggcacataa cgtcgtcaag cagaaatccc acccgtcaaa
     1261 gatccacttt atcccaagct gtgatcatca cagtggtctg gacttcgaag tcatttctca
     1321 gcctcatatt gtgtttgtag atgtggagag gactactggg cagcaagaac aggtcttgtt
     1381 ttatgctgtc tgctctggag aatatgtgtt gtgatgtccc tctgatgggt tgggacttgt
     1441 tgggcatctc taatgagatg cagattgatg ctctcctgtg gacactggga ggtggagggc
     1501 aatacacagg tgccatctgg tcagagtatg tccaacacat ggttttacac tgttgttctt
     1561 ctgagtggta gggaaattga tgctagagtg caaaaaagtg agagtgtttg acatagggag
     1621 tgtgagacat cgacagacat catgggttct ggttgggcag gtgcaaaagg gcattcctcc
     1681 agcctggtgg ttttcggatt ttatggtgga aaacgggact ggcccacttg gatgatttga
     1741 gtcctgtgac tgctggaaac aaacttgaac tcctggttct tctgctcttg gcttctgcgt
     1801 gctgagctta gactcaaaac cccatacctg gttccttaca gctcctttaa catcgtggct
     1861 gtgcataggt tttctagtcc aacactaaca ttgagtagca gtttttgtgg gactagagag
     1921 atggacttag cagttgagaa cacttgatgc tttttgtaga gaacctgggt ttgattgatt
     1981 ccccagatcc acatggtggc tcagccaacc agaactactc acagggcaca cgaggcatga
     2041 gtgtggtgca ttagtcttgc gtatacgtga aacactcagg catgtacatc tgaaataatt
     2101 taaatactgg tttgtattgc tgacaccgaa tgtcttgggt cagccagcac ccagcattac
     2161 tgtgacagac actgttaagt catatattta tactcataaa atgccactta tgagcttagg
     2221 aaattgaacc aggaatgtgt ggacaagtgg acaaactcta gcagaaaaaa aagaaaccaa
     2281 gcttttatga caatattaga caccctagac cactgttgga tgcagttccc atcctgattc
     2341 atctaaagag ggacatcagg tactggggcc atgataatgt gtgttctcag gctgggttga
     2401 tacaagctct gactctgtcc ctaggctgca acatgacatc ccccactgct gggcctcttt
     2461 aattgttttg tggttagtgt gttgtctctc caaatgaggc tgtggttaaa cctcaggtgg
     2521 tgtgtatcat gctcactcct tcccttgaca agactttcat ggaaccagaa gcttgatggt
     2581 tcacctagac ctagacctgt tagccagagg gctcccatgg gtctgccggt ctctgctgga
     2641 gctgcaggct catgcctctg tgactgacct ttct
//
