LOCUS       XM_001076970            2791 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus PRAME family member 17 (Pramef17),
            mRNA.
ACCESSION   XM_001076970
VERSION     XM_001076970.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_001076970.6.
            
            On Jan 21, 2021 this sequence version replaced XM_001076970.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2791
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2791
                     /gene="Pramef17"
                     /note="PRAME family member 17; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:691139"
                     /db_xref="RGD:1587447"
     CDS             423..1844
                     /gene="Pramef17"
                     /codon_start=1
                     /product="preferentially expressed antigen in
                     melanoma-like protein 7"
                     /protein_id="XP_001076970.1"
                     /db_xref="GeneID:691139"
                     /db_xref="RGD:1587447"
                     /translation="MDLKAPPTLLQLAAQSTVKKEVLTISVLEYLPRELFPTLFKEAD
                     TQRKAKMIKILVEYWPYPCLLVRLLIDKPNLEIFQAILDGVGTWLKRKYRPRMGKLEV
                     VDLRNGHLDSWDLQAGREGGGAQSETVPEKQVMEGHSNRRRLRVFCDLSFKSSKHEDK
                     HQTHLLRWAKDREDFLHLCCKKLEIGALEVSKVKKELKFLQPEFIKELELNTVGNLSK
                     LAKLVPCISKMRNLHKLMLVRIFERTYTPSEKNVSKIISLFPELRYLQNLTIGDVYFL
                     KDHMNELLRCLVAPLVSLTITLCQISQSDLESFAQRWNYGQLKHLCLKGVSLTALNVT
                     PLKFFLESVANTLQTLELEGCRMSDSHLSILQPALTQCTQLTSFNFYDNNISMDALKD
                     LLRHTVKLSQLTMELYPAPVEVYNEWGYVQVETFSQLCAELMDTLVAVRQPKSICFGT
                     YSCYDCDTRCIYEKKATFCECLE"
ORIGIN      
        1 tctctgagtt caagggtgct ctggtctaca aagtcagttc ctggacaacc agggctgtta
       61 cccagagaca cagttttgaa aaatgaagta aaaaaaaaaa aaagggggta gagaagcaat
      121 ttccccattt catagattct tccctgtctt tgccagaata taagttgaaa gcagaatatg
      181 agttaattaa gtatatagct tttttcctcc tctctgaaag gtgatggggc tctgtttttt
      241 ttcctggatg cttctttcca aaagaatatg ggattcagag tagcaaagtt tggaactgga
      301 catcatggcc gccatggaga cagatactta ctgtgaggag ttaaaagcct cataagagag
      361 accctgaaaa tacagtctct tctaaatttt tccccaggat catcgcccta agatccatca
      421 gaatggacct gaaagcccca cccacactcc tgcagctggc tgcacagagc acggtaaaga
      481 aggaggtgct gaccatctct gttctggagt acctaccaag ggagctcttc ccaacgctgt
      541 tcaaggaggc cgacactcag agaaaagcaa agatgattaa gatcctggtg gaatactggc
      601 cctacccttg ccttcttgtt aggttgctga tagataaacc caacttggag atcttccagg
      661 ctatactgga tggagttggc acatggctga aacggaaata tcgccccagg atggggaagc
      721 ttgaagtggt tgatttgagg aatggacacc ttgactcctg ggatttgcag gctggaagag
      781 agggtggagg agcccaatca gaaactgtgc ctgagaagca agtaatggag ggccactcaa
      841 acaggcggcg tttgagggtg ttctgtgacc tttcctttaa gtcttctaag catgaagata
      901 aacaccaaac acatctgttg cggtgggcaa aggacagaga ggatttcctg catctgtgct
      961 gtaagaagtt agagattgga gcattagaag tgtccaaggt caagaaggag ttaaaatttt
     1021 tacagccaga gttcatcaag gagttggaac tgaatacagt ggggaatctg tccaaattgg
     1081 caaaacttgt accttgcatc agcaagatga gaaatcttca caaactcatg ctagtacgca
     1141 tctttgaaag gacctataca ccctcagaga aaaacgtctc caagatcatt tctctgttcc
     1201 ctgaactcag gtatctccag aatctcacta ttggtgatgt ctattttctt aaagaccaca
     1261 tgaatgagtt actcaggtgt ctggtggctc ccttggtgtc cctgactatc actctctgcc
     1321 agatctctca gtcagatttg gagtcatttg cccagcgttg gaactatggt cagcttaaac
     1381 atctgtgttt gaaaggtgtc tctttaactg cattgaatgt cacgcctctc aaatttttct
     1441 tagagagtgt tgcaaacact ctgcagactc tagaattaga aggctgtagg atgagtgact
     1501 ctcacctcag tatccttcag cctgccctga cccaatgcac ccagctcact agtttcaatt
     1561 tttatgacaa taacatctcc atggatgctc tgaaggacct tctgcgtcac actgtcaaac
     1621 tgagccagct gaccatggaa ctgtaccctg ctccagtaga ggtctataat gagtggggtt
     1681 atgttcaggt agagacattt tctcagcttt gtgctgagct catggacaca ctcgtggctg
     1741 taaggcagcc caagtcaatc tgctttggta cctattcctg ttatgactgt gacacacgct
     1801 gtatctatga aaagaaggcc acattttgtg aatgcttgga gtaacaacag gaatatttct
     1861 tctgggtact aagaaatggt tgcccaggga ctggtctttt catccagaac acatcgtttt
     1921 ggacatttgt cagtgtggtg caaacaatgg ttcaaactcc tgtcaggact gacttctttg
     1981 cttcctacat atgaagatcc tgagaacctg atattctctc tgtactgtgc ttcgcaatta
     2041 attggttctc aagattatag tcaggaccgt tcttccactg tacacaggga tggagggaga
     2101 ctgtgttgtc tacgcttttg ttccataagg cctctcaatg tgtcatgaag ctattctgac
     2161 attgccattt ttgcatctgc ctggtaggtc atgtatgcaa agccaaagat tgaagaaggt
     2221 agctttggtg aatgaactgc agattgtaat tcaggctggt caagctagta ggagttgtgg
     2281 ggcatcattg atagtggaag cagaagaaaa caatgaagaa caaagagata acataaagca
     2341 aatataaagc tcagcaacat ttttaatcct tttttatttc taatggtgta ttgtagctta
     2401 gactggcctt gaactcctca tcctcttacc tccacttctg gaggtcatta acagatactt
     2461 caaaggtcag cttgtagacc acctgacctt gaggccctgt tcttcaggct ctcaacctct
     2521 ggtcagcctc ctgcccatta atggttacag gagatggaca gaaattcctg ttctctctaa
     2581 aagaattggc agtcccttgg aactgcagaa tagatgtggc tgagtctagc cactgtgttc
     2641 ccttgtgtct gtataatcag gtatcaataa agaatgtgcc aaaccttttg gctttttttc
     2701 tttgttagat ttatttacaa aaatattggt agctaagatt gctcaatggt caaaggatac
     2761 ttggagcaat attggaataa taaaggaggg g
//
