LOCUS       XM_039080064            5827 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus PML-RARA regulated adaptor molecule 1
            (Pram1), transcript variant X1, mRNA.
ACCESSION   XM_039080064
VERSION     XM_039080064.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080064.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5827
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5827
                     /gene="Pram1"
                     /note="PML-RARA regulated adaptor molecule 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 5 ESTs, 5 Proteins, and 98% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     34 samples with support for all annotated introns"
                     /db_xref="GeneID:362848"
                     /db_xref="RGD:1564330"
     CDS             3537..5717
                     /gene="Pram1"
                     /codon_start=1
                     /product="PML-RARA-regulated adapter molecule 1 isoform
                     X1"
                     /protein_id="XP_038935992.1"
                     /db_xref="GeneID:362848"
                     /db_xref="RGD:1564330"
                     /translation="MLVNMGNWEEKTDLEWGFLRGHPQEHYDEDMKEDEERPMHCVGS
                     NQDFRNLQAKFQASQPELGEPFRKPPKPEFNKLLKKFPQTELNEQPKKSSQSELSAVS
                     LKPLQLQFADLPKKPPQPEVLKKLPQPDLAKKPAQAELPRKPLHPESAGLKKPSQADF
                     TDLKKPSQPQFASLPKPPQSEFPNLPKKLPKPEFGELSKRSPQLEAPQEPSVPAQKSE
                     LNNPARPLDLKPKKFWQLESNEAPLRPLPSEFSTFPKKPLQPEAVGLFGKSLTQSESI
                     QVPQTSPSKHGSSEFYSHSPQPDISPFPKNTVQSQFNENFRKPPYLQATGCPKSPKQP
                     MFYEVPQTPSWKPESCNPQSHSPQPDFNAFPKKHLQLHSSDLTRTSSEPEVCKVPKKT
                     QHPDPNVLSKKPSQPELGHLPRTSSEPEFSSLPRKPQHGKFFQPEFPKGLPKKPKLPG
                     SVSESSLPPAIVGSSPQLPLSPGLRVPGIPRWKSEDFQVRCPPRRRPLPSASSLGHPP
                     AKPPLPPVPINIQSFRRAPETATAVLKRGSSIGTHFQGQHSQHIAQNPDEIYELYDAV
                     EATDDSSLSPRGRDERQSTQQATRWPQKEPELRKKATQPQQLPATDPKLQKQIRKAEK
                     AEREFRKKFKFEGEIVIHTKMMIDPNAKTRRGGGKHLGIRRGEILEVIEFTNKDEMLC
                     RDPKGKYGYVPRTALLPLETEVYDDVSFGDPLDTQPFPQGQYGR"
ORIGIN      
        1 attataggca tgactttttt catattccta cctctgactc cattcaagat tctggaaact
       61 taaacccaga cttagccatc cctaaccatc aagactcctg caaaagcaga ctcatctctg
      121 ggaactctcc aagacaggaa agcagaagca tcagaatctt gatgctgtgt gctaaaatga
      181 gggaggtgtc tctcccaagc taagctgctt tctttccatt taaataagct catgaaacac
      241 cccctgagct cattcccaag agttatacag gttcttgcta ttccatcagc ctcataacac
      301 acagcagcac acttatcacc taagtcaaga cctgttgatt ttgtttctaa gattgggttt
      361 cgttgtgtgt gttccttgct acactggaac tatggcctta aactaccaga ccttccaatc
      421 ctcctgttct tacctcccaa atgctgtttt atgaagttct ggaaatcagg tttaagcctt
      481 tgtacatgct atataaaagt acactaccag agctacaaac cttggattta tttattttcc
      541 tttgacaggg tctcaacttt atttttccca agataagttc tcattatgta gccctggctg
      601 tcctagaact tggtatgtag accaggctat cctagaactc agagatccac ctgcttctgc
      661 ctcccaattg ctgagataaa ggtcattatg tccttttaac agggtctcaa ctttctagcc
      721 agagtatggt catgcactta atatcctttt gcccccagtc tcccagatgt tgggattaca
      781 gatgtgtgcc accatacctg agcaggacat ggacttcttt ggttaagttt ctgagtcagg
      841 gtctcattat gtagcgttaa ctggcctgaa attcactatg tagattaggt taaccttgga
      901 aaggttgcta ctactacttc tgctggtatt acaagtatgc accacgacat caagtgcgta
      961 gagatgtact ttgtgactct agggacatcg acacatgtat actcatctat gcactggaac
     1021 caccctacta gggtctacat attcctactg ggaccacacc ccagactggt gacataggaa
     1081 tctctagaag atctttttca acagttcaca gaattctatt ctgttcccaa actgagaatc
     1141 atatctctgt actctgctga ctgttctttg ttcctgtgga ctgaatcctg tgctcggggc
     1201 tctccttttc ctatatctac ctttgtccca ctttgggtct caagggctat ttccattttc
     1261 ctgcaattca gttttctggt ttctcctctc tgtgcttcct ttaaccacaa gaaacttgag
     1321 aggtcctaaa accccctacc ttcacaggaa caatcatatc ccctggcccc agagacttaa
     1381 atttttttaa taccacccac ccataaatct gctatcccag ttgattatgc tttggaggta
     1441 cagccctgac tgatgtggca tttgtcactt taacaaggaa gtcctgttga gagtacaagt
     1501 ggtgaaacaa ggcagatgaa gcaatatagg aggacagata tgtcctcata attgcaccag
     1561 ccatatccta ggcctaactc ttagagactt ctaagaccca gagaaaacca taaaatcccc
     1621 actgaggtgc tctgttcctg tggctgtcct tgcttctttg gagacaaagc ttgtcagaac
     1681 cccaaagtgt taaaactaag agggaagggg gttggggatt cagctcagtg gtagagcgct
     1741 tgcctagcaa gcgcaaggcc ctgggttcgg tccccagctc cgaaaaaaag aacaggaaaa
     1801 aaaaaaaaaa aaactaagag ggaagaggga caatagggaa gaggctagtg gcagctccga
     1861 actgtgtgct ttagagatgt gcttaggtct aatgacctga ccttggggac agacagtagt
     1921 agacagacct caaggaggtg acagaaggcc aactccgcct ccttcctcct ctgccctcct
     1981 caccctgaca gcccctactt ggtgtgtcag cctgtggaac agaaaccact gttacttcct
     2041 caagacagaa gcgtaagctc agagcccatt caccctgtgg ttcatcacac cctgaagcca
     2101 tggtgagtcc tcaagccccc attggaaatt cttctggcca ggtaacaagg gggcacaagc
     2161 agaaactggg gaactgtaaa tatgccccca ggagtagcct agcagaatag agatagaata
     2221 gtcttggaat gaaatgaccc aggaaaagat agggactagc aaggcatagc ttgagctctt
     2281 gtgtaccagc tttgtatttg tgactacaag gcagtgtggt gctggttggg tctgcaagaa
     2341 acaatatacc ctcaacccag gtcagcagct gggatataag cagaggcttc ctgtgggatg
     2401 attatatggg tcatgcacct gctacaccag tccccatctc cagccagtca gttacccaag
     2461 ctatgctgtt aaactcttcc ttatctagtc ctgtggtcat ctggagttgt tgcctcaact
     2521 cacttagact ggggcttcaa caaaggcatg tctgacctca ggcaagaatt tgcttccttc
     2581 ccagagatcc ttctgagtcc atctcaagat gggttcacaa ggttctgtcc tctctgttct
     2641 ccaatcttct ttacccttgg tgaagatagg ctgggagtat ctatcagtat ttctaccagc
     2701 acctgtgacc tatggcagag agccggtcag acttgagagc acaggagatg ttctgaacat
     2761 gtcatatggt gcctgtaccc atttggagat tctgcctgct ggtcctcatg gggggtttca
     2821 tgagttatat cagggactat cagaccttat acccacatct tagatagatg tgtgtgaagc
     2881 ttaacttaga ctggctggcc aacaagccct agagggcctc ctctcttatc ctctccagag
     2941 ctaaggatga caggtactgc tgctgacttt tttatatatg aatactagga ctcaggcttg
     3001 catgacaagt actttgccta ctgagcaatc cttctaaccc ccaaaataaa attttaacag
     3061 tttatagtca aactggatgt ggtggtacac acccataatc ccagtactca gatggctgaa
     3121 gcagtaaaat tgtggaatcc cagacaagcc tgggctacat agtgagaaac tgactcaaaa
     3181 caagtaaata aataaagcca gtggtggcac acacctgtaa tcgaagcaca tgggaggtgt
     3241 aggcaggagg atcaggagtt caaggttatc ttcaactcta aagcaagtct gaggccagcc
     3301 agcccaggat aaatgagacc ctgcttcaaa acacaaacac tgaagaaaaa aaaaaaaaaa
     3361 aaagacaaag cccctcacta ctggggaata gagctcactg ctacagagct tgtttagcaa
     3421 ggtgctacat tccctcccta acaccacgaa aataaaaacc ctcaaaacaa ccttgtaaag
     3481 acagcataac tagtataaaa aacttcctag gtaatgagag acaaagaaaa cagaaaatgt
     3541 tagtgaatat gggcaactgg gaagagaaaa ctgatttaga atggggtttt ctcagaggtc
     3601 accctcagga acattatgat gaagacatga aggaggacga ggagagacca atgcactgtg
     3661 tggggagcaa tcaggacttc agaaacctcc aagctaagtt ccaagcctct cagccagaac
     3721 ttggagaacc gttcagaaaa cccccaaagc ctgagttcaa caaactcctg aagaagtttc
     3781 cacagactga gttaaatgag cagcccaaga agtcctcaca gtctgagctc agtgcagtgt
     3841 ccttgaaacc actgcagctg cagtttgcag acctccccaa gaagccccca cagcccgaag
     3901 ttcttaaaaa gttgccacag cctgatctag ccaagaagcc tgcacaggct gaactcccaa
     3961 ggaagcctct acatccagag tccgctggtc tcaaaaagcc ttcccaggct gacttcacag
     4021 atctcaagaa gccctcacag ccccagtttg ccagcctccc caaacccccc cagtctgaat
     4081 tccctaatct ccccaagaag ctccccaaac ctgagtttgg agagctctcc aagagatctc
     4141 cacagcttga ggcaccccag gagcctagtg tacctgccca gaagtctgag ctcaacaatc
     4201 ctgccaggcc tctagatctc aaacccaaga agttttggca acttgagtcc aatgaggccc
     4261 ctctgaggcc tttgccatct gagttcagta ccttccccaa gaagccactg cagcctgagg
     4321 ctgttggttt gtttgggaag tccctaacac agtcagagtc catccaagtt cctcagacat
     4381 ccccctctaa gcatggatcc agtgagtttt actcccactc cccacagcct gacatcagtc
     4441 cctttccaaa gaacactgtg cagtctcagt tcaatgagaa ttttaggaag cctccatatc
     4501 ttcaagccac tggttgcccc aagtccccaa aacagcctat gttctatgag gtcccccaga
     4561 caccctcctg gaagcctgag tcatgtaacc cccagtctca ctccccgcag ccagacttca
     4621 atgcatttcc caagaagcat ctacagcttc attcaagtga ccttaccaga acatcctccg
     4681 agcctgaagt ctgcaaggtt cccaagaaga ctcagcatcc agaccccaat gtgctttcta
     4741 agaagccctc acagccagaa ttgggtcacc ttcctagaac atcctcggaa cctgagttca
     4801 gctcactccc gaggaagcct caacatggca agttcttcca gcctgagttc cccaagggtc
     4861 tgcctaaaaa gcccaagctt cctggttcag tgtccgaaag ctccctgccc cctgctattg
     4921 tgggctcaag cccccagctc cccctcagcc ctggacttag agttcctggt ataccccgct
     4981 ggaaatcaga agacttccaa gtccggtgcc caccccgacg gcggcccctg ccctcagcca
     5041 gcagcctggg tcacccccca gccaagcccc cactaccacc tgtccccatc aatatccaaa
     5101 gcttcaggag agctcctgaa acagccacag ctgtactgaa aagaggctct tctattggga
     5161 cccacttcca aggccaacat tctcaacata ttgcacagaa cccggatgag atctatgaat
     5221 tgtatgatgc tgtggaggcc acagatgact ctagtctcag ccctagaggc agagatgaaa
     5281 ggcagtctac ccagcaagcc accagatggc ctcaaaagga gccagagctc aggaagaagg
     5341 ccacacagcc ccagcagctg ccagccacag accccaagct gcagaaacag atcaggaagg
     5401 cagaaaaagc tgagagagag tttagaaaga agttcaagtt tgaaggtgag attgtaattc
     5461 acacaaagat gatgattgac cccaatgcca agacccggcg tgggggtggc aagcacctgg
     5521 gcatccggcg tggagagatc ctagaggtga ttgaattcac taacaaggat gagatgctct
     5581 gccgggaccc caagggcaag tatggctatg tgcccagaac tgcattgttg cccttggaaa
     5641 ctgaagtata tgatgatgtc agctttgggg accctctgga cacgcaacca tttcctcagg
     5701 gacagtatgg cagataagtg ggttccagga ccaacagtcc agccactgct cactcaggag
     5761 ccctggatcc cagcctggca aacagacacc caaaggaatg tgcttacata aaagtcctct
     5821 taaaata
//
