LOCUS       XM_039099041            1361 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus palmitoyl-protein thioesterase 2
            (Ppt2), transcript variant X2, mRNA.
ACCESSION   XM_039099041
VERSION     XM_039099041.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099041.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1361
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1361
                     /gene="Ppt2"
                     /note="palmitoyl-protein thioesterase 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 26 ESTs, 1 long SRA read, 1 Protein, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 21 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:54398"
                     /db_xref="RGD:620375"
     CDS             33..707
                     /gene="Ppt2"
                     /codon_start=1
                     /product="lysosomal thioesterase PPT2 isoform X2"
                     /protein_id="XP_038954969.1"
                     /db_xref="GeneID:54398"
                     /db_xref="RGD:620375"
                     /translation="MPGLWRQRLPSAWALLLLPFLPLLLPAAPAPHRGSYKPVIVVHG
                     LFDSSYSFRHLLDYINEMGQYGDTDYLKWLFPTSMRSNLYRICYSPWGQEFSICNYWH
                     DPHHDDLYLNASSFLALINGERDHPNATAWRKNFLRVGRLVLIGGPDDGVITPWQSSF
                     FGFYDANETVLEMEEQPVYLRDSFGLKTLLARGAIVRCPMAGVSHTTWHSNRTLYDAC
                     IEPWLS"
ORIGIN      
        1 taagtgcgcg tgtccagacc acaggtggga gcatgccggg gctatggagg cagaggcttc
       61 cttcggcttg ggctttgctt ctcctgcctt tcctgccgct gctgttgccc gcagcccccg
      121 caccccaccg cgggtcctac aagccagtga tcgtggtgca tgggctcttt gacagttcat
      181 acagcttccg ccacctgctg gactacatca atgagatggg acagtatgga gacacggact
      241 atttgaagtg gctgttccct acgtccatgc ggtctaacct ctatcggatc tgctatagcc
      301 cctggggcca ggaattttcc atttgcaact actggcacga ccctcaccac gatgacttgt
      361 acctcaacgc cagcagcttt ctggccctca tcaatgggga gagagaccat ccgaatgcca
      421 ctgcatggcg gaagaacttc cttcgtgtgg gccgtctggt gctgattggg ggtccggacg
      481 atggagtcat cactccctgg caatctagct tctttggttt ctatgatgcc aacgagacgg
      541 tcttggagat ggaggaacag ccggtgtatc ttcgagactc ttttgggttg aagactctct
      601 tggcccgggg ggccatagtg agatgcccca tggctggggt ctctcacacc acctggcact
      661 ccaatcgcac gctctatgac gcttgcattg agccctggct ctcctgaaga cgtcctcagg
      721 gctctccagg aattccccag cccagagatc aagtggtggc cttctggcgt gcctgtgacc
      781 acctcgtcgc tcccacactg ccccacctcc ccaccagggc tcccaaaccc tcccctctgc
      841 tcctctgtga atgacaagtc ctggtcccct acctcatgtc ctcacttggg gacgtctcca
      901 tgctctccct ttctgccatg gctgaggttg ggaagcaagc accaggtttt taactgtggc
      961 ttcaccgctg ctgctgttgc ttctccgggt ctggctgtac cggaggagaa cccagcccct
     1021 gcccacctca ggggtcttcc aggccactca ggacattttt agcttgttat tcccatgccc
     1081 ctcttttctg tccctgtggc cagcctcccc accgagaggg gcgcccgtac aagggggttc
     1141 tgaggctccc ctatggggac agttccactt ttgaagtgtc agtgttgggg aatatctgtg
     1201 gcctgcaagg cccatctcag gtttggggat cccccagtcc ctatgatcag tgttggggta
     1261 tcccctggga gcctaggttc tttgaggccc cagcccctct tttaaccacc cttgagtggg
     1321 tggtccccgt atttatagaa ataaaagttc catttcctca a
//
