LOCUS       NM_001135849            4345 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus protein phosphatase 6, regulatory subunit 1
            (Ppp6r1), mRNA.
ACCESSION   NM_001135849 XM_001071295 XM_341781
VERSION     NM_001135849.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4345)
  AUTHORS   Lant,B., Yu,B., Goudreault,M., Holmyard,D., Knight,J.D., Xu,P.,
            Zhao,L., Chin,K., Wallace,E., Zhen,M., Gingras,A.C. and Derry,W.B.
  TITLE     CCM-3/STRIPAK promotes seamless tube extension through endocytic
            recycling
  JOURNAL   Nat Commun 6, 6449 (2015)
   PUBMED   25743393
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4345)
  AUTHORS   Nasu-Nishimura,Y., Hayashi,T., Ohishi,T., Okabe,T., Ohwada,S.,
            Hasegawa,Y., Senda,T., Toyoshima,C., Nakamura,T. and Akiyama,T.
  TITLE     Role of the Rho GTPase-activating protein RICS in neurite outgrowth
  JOURNAL   Genes Cells 11 (6), 607-614 (2006)
   PUBMED   16716191
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474075.1.
            
            [WARNING] On Apr 9, 2024 this sequence was replaced by
            NM_001135849.2.
            
            On or before Oct 17, 2008 this sequence version replaced
            XM_341781.3, XM_001071295.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4345
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q12"
     gene            1..4345
                     /gene="Ppp6r1"
                     /gene_synonym="RGD1311409; Saps1"
                     /note="protein phosphatase 6, regulatory subunit 1"
                     /db_xref="GeneID:361502"
                     /db_xref="RGD:1311409"
     exon            1..529
                     /gene="Ppp6r1"
                     /gene_synonym="RGD1311409; Saps1"
                     /inference="alignment:Splign:2.1.0"
     exon            530..762
                     /gene="Ppp6r1"
                     /gene_synonym="RGD1311409; Saps1"
                     /inference="alignment:Splign:2.1.0"
     CDS             536..3115
                     /gene="Ppp6r1"
                     /gene_synonym="RGD1311409; Saps1"
                     /note="SAPS domain family, member 1"
                     /codon_start=1
                     /product="serine/threonine-protein phosphatase 6
                     regulatory subunit 1"
                     /protein_id="NP_001129321.1"
                     /db_xref="GeneID:361502"
                     /db_xref="RGD:1311409"
                     /translation="MFWKFDLHTSSHLDTLLEKEDLSLPELLDEEDVLQECKVVNQKL
                     LDFLLQPSHLQAMVAWVTQEPSASGEERLRYKYPSVACEILTSDVPQINDALGADESL
                     LNRLYGFLQSGDSLNPLLASFFSKVMGILINRKTDQLVSFLRKKDDFVDLLLRHIGTS
                     AIMDLLLRLLTCVERPQLRQDVFNWLNEEKIVQRLIEQIHPSKDDNQHSNASQSLCDI
                     IRLSREQMIQGQDSSEPDQLLATLEKQETIEQLLSNMFEGEQCQSVIVSGIQVLLTLL
                     EPRRPRSDSVTMNNFFSSVDGQLELLAQGALDNALSSMGALHALRPRLDRFHQLLLEP
                     PKLEPLQMTWGSLAPPLGNTRLHVVKLLASALSTNAAALTQELLVLDVPNTLLDLFFH
                     YVFNNFLHAQVEVCVSAMLSSGPPPDSSPETPVPNPIVKHLLQHCRLVERILASWEEN
                     DRVQSGGGPRKGYMGHLTRVANAVVQNAEQGPNAEQLGQLLKELPEEQQQRWEAFVSG
                     PLAETNKKNTVDLVNTHHLHSSSDDEDDRLKEFNFPEEAVLQQAFMDFQMQRMTSAFI
                     DHFGFNDEEFGEQEESVNAPFDKTANITFSLNADDENPNANLLEICYKDRIQQFDDEE
                     EDEEEGHGSAESDGEYGAWQGSQPVRASQASQPPGVRSGGSTDSEEEEEEEEEEDEDE
                     GADQAACGRTSPSSFPSPGPQPSGPSWTATFDPVPMDAPTGPPVSKEADISSIQILSS
                     PPAHDSPQLRSQDPTHPSAPQEVTDSSKVAEPLAPCQALVSVADVQATLHGMRSAPSY
                     LDSATRDPSTSVPDFKAHQSPQTMEGKKSPEHLGLPQNQSAQALEMPNGSTPGGPITS
                     GSQ"
     exon            763..949
                     /gene="Ppp6r1"
                     /gene_synonym="RGD1311409; Saps1"
                     /inference="alignment:Splign:2.1.0"
     exon            950..1087
                     /gene="Ppp6r1"
                     /gene_synonym="RGD1311409; Saps1"
                     /inference="alignment:Splign:2.1.0"
     exon            1088..1153
                     /gene="Ppp6r1"
                     /gene_synonym="RGD1311409; Saps1"
                     /inference="alignment:Splign:2.1.0"
     exon            1154..1266
                     /gene="Ppp6r1"
                     /gene_synonym="RGD1311409; Saps1"
                     /inference="alignment:Splign:2.1.0"
     exon            1267..1380
                     /gene="Ppp6r1"
                     /gene_synonym="RGD1311409; Saps1"
                     /inference="alignment:Splign:2.1.0"
     exon            1381..1543
                     /gene="Ppp6r1"
                     /gene_synonym="RGD1311409; Saps1"
                     /inference="alignment:Splign:2.1.0"
     exon            1544..1696
                     /gene="Ppp6r1"
                     /gene_synonym="RGD1311409; Saps1"
                     /inference="alignment:Splign:2.1.0"
     exon            1697..1831
                     /gene="Ppp6r1"
                     /gene_synonym="RGD1311409; Saps1"
                     /inference="alignment:Splign:2.1.0"
     exon            1832..1896
                     /gene="Ppp6r1"
                     /gene_synonym="RGD1311409; Saps1"
                     /inference="alignment:Splign:2.1.0"
     exon            1897..2012
                     /gene="Ppp6r1"
                     /gene_synonym="RGD1311409; Saps1"
                     /inference="alignment:Splign:2.1.0"
     exon            2013..2098
                     /gene="Ppp6r1"
                     /gene_synonym="RGD1311409; Saps1"
                     /inference="alignment:Splign:2.1.0"
     exon            2099..2188
                     /gene="Ppp6r1"
                     /gene_synonym="RGD1311409; Saps1"
                     /inference="alignment:Splign:2.1.0"
     exon            2189..2286
                     /gene="Ppp6r1"
                     /gene_synonym="RGD1311409; Saps1"
                     /inference="alignment:Splign:2.1.0"
     exon            2287..2344
                     /gene="Ppp6r1"
                     /gene_synonym="RGD1311409; Saps1"
                     /inference="alignment:Splign:2.1.0"
     exon            2345..2517
                     /gene="Ppp6r1"
                     /gene_synonym="RGD1311409; Saps1"
                     /inference="alignment:Splign:2.1.0"
     exon            2518..2651
                     /gene="Ppp6r1"
                     /gene_synonym="RGD1311409; Saps1"
                     /inference="alignment:Splign:2.1.0"
     exon            2652..2784
                     /gene="Ppp6r1"
                     /gene_synonym="RGD1311409; Saps1"
                     /inference="alignment:Splign:2.1.0"
     exon            2785..2855
                     /gene="Ppp6r1"
                     /gene_synonym="RGD1311409; Saps1"
                     /inference="alignment:Splign:2.1.0"
     exon            2856..2937
                     /gene="Ppp6r1"
                     /gene_synonym="RGD1311409; Saps1"
                     /inference="alignment:Splign:2.1.0"
     exon            2938..3048
                     /gene="Ppp6r1"
                     /gene_synonym="RGD1311409; Saps1"
                     /inference="alignment:Splign:2.1.0"
     exon            3049..3111
                     /gene="Ppp6r1"
                     /gene_synonym="RGD1311409; Saps1"
                     /inference="alignment:Splign:2.1.0"
     exon            3112..4345
                     /gene="Ppp6r1"
                     /gene_synonym="RGD1311409; Saps1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcgggggta gccgtgcgtc ggaggcctta aggtggacgg ctgggccggg gagacccagc
       61 cgtttcgggc gacactgaag tcgaggagac gggcgtcggc cttcggtgca gctctgcacc
      121 cgttgaggct gcggcggctt ctttttcctg ttccgcgggt gccggcgtgt ttgtgtgtgt
      181 ctctgtgtgt gtgacccgcg gcgacttccc ccgtcgcccc tgcttcggag gcgcctgcgc
      241 aggcctcgcg tctgccacgg agctttgccg tggaacgagt gcgcctactt tttcgcgacg
      301 ccccgaactc gttgacgctc ggtggtgagg caggggattc cctgtgacca gagggcgctt
      361 gcgcgggtcc gctagctccg gcccaggcgc ctgcgcgagc ccccaccccc ccggcgccga
      421 ccccgcctct cttagccggc ccctcgacag ggccggagcc gccggcggtg gggcggcggg
      481 ggcgccccga tgagccccga gtgcgaggag ccgccgcccc cccgcgcagg gcgccatgtt
      541 ttggaagttt gacctgcaca caagctctca cctggacaca ttgctggaga aggaggacct
      601 gagcctacct gagctgctgg atgaggagga tgtgctgcag gagtgcaagg ttgtcaatca
      661 gaagctctta gacttcctgc tacagccttc ccacttgcag gccatggtgg cctgggtcac
      721 ccaggagccc tcagccagtg gtgaggagcg gctacgctac aagtacccta gtgtagcctg
      781 tgaaatcctg acctctgatg tgcctcagat caatgatgcc ctgggtgcag atgagtccct
      841 cctgaaccga ctctatggct tcctgcagag tggtgacagc ctcaacccgc tgcttgctag
      901 ctttttcagc aaagtcatgg gcattctcat caatcgcaag acagaccagc ttgtgtcctt
      961 cctgcgcaag aaagatgact ttgtggatct gttgctgcgt cacattggta cctcagccat
     1021 catggatctc ctattgcgtc tgcttacttg tgtggagcgg cctcagcttc ggcaggatgt
     1081 cttcaattgg ctcaatgaag agaagattgt ccagcggcta attgagcaga ttcacccatc
     1141 aaaggatgac aatcaacatt ccaatgcatc tcagtccctg tgtgacatca tccgcctaag
     1201 ccgggagcag atgatccaag gccaggacag ctcggagcca gaccagctgt tggccacctt
     1261 ggagaagcag gagaccatcg agcagctcct cagtaacatg tttgagggag aacagtgcca
     1321 gtctgtcatt gtcagtggga tccaggtgct gctcaccctc ctggaaccta ggaggccaag
     1381 gtctgactct gtgaccatga acaacttctt tagcagtgtg gatgggcagt tggagctcct
     1441 ggctcaggga gccctggata atgcactctc tagtatgggt gccttgcatg ccctgcgtcc
     1501 ccggcttgac cgcttccatc agctcctgct tgagcctccc aagctggagc ctctgcagat
     1561 gacgtggggc agcctggccc caccactggg taacacgagg ttacatgtgg tcaagctctt
     1621 ggccagtgcc ctgagtacca atgctgctgc cttgacacag gagcttctgg tgctggatgt
     1681 acccaacacc ttactggacc tcttcttcca ctatgtattc aacaatttcc tgcatgctca
     1741 agtggaggtg tgtgtgagtg caatgctgag ttccgggccc cctccagaca gcagccctga
     1801 gacacctgtc ccgaacccta tcgtgaaaca tctccttcag cactgccgcc tggtggagcg
     1861 cattctggcg tcctgggagg agaatgaccg tgtgcagtct ggagggggcc caagaaaagg
     1921 ctacatgggc cacctgactc gggtggccaa tgccgtggtg cagaatgcag aacaggggcc
     1981 caatgctgaa caactgggac aactgctaaa ggagctgcca gaggagcagc aacagcgatg
     2041 ggaagcattt gtgtcaggac ccctggctga gaccaacaag aagaacacag tggatctggt
     2101 aaacactcac catctacatt cttccagtga tgatgaggat gaccgcctca aggagttcaa
     2161 cttccctgag gaggctgtat tgcagcaggc cttcatggac ttccagatgc aacgcatgac
     2221 ctcagccttc attgaccact ttggctttaa tgatgaggag tttggggaac aggaagaaag
     2281 tgtgaatgca ccatttgaca agactgccaa cattaccttc tccctaaatg ctgatgatga
     2341 gaatcccaat gccaacctgc ttgagatatg ctacaaggac cggatccagc agtttgatga
     2401 tgaggaagaa gatgaggagg agggccatgg ctcagcagag tcagatggag agtatggtgc
     2461 ctggcagggc agccagccag tgagagcatc ccaggcaagc cagccccctg gtgtgcggag
     2521 tggaggaagc acagacagcg aggaggagga agaagaggag gaagaagagg atgaggatga
     2581 gggggctgac caggcagcat gtggaagaac cagcccttcc tccttcccca gccctggccc
     2641 tcagccttct ggcccaagtt ggactgctac ctttgaccca gtgcctatgg atgccccaac
     2701 aggcccccca gtttccaagg aggcagacat atcctctatc cagatcctat ccagccctcc
     2761 agcccacgat tccccacagc tcaggtcgca ggaccccaca cacccctcag cacctcagga
     2821 agtcacagat agcagcaaag tagcagagcc cttggccccc tgccaggcct tggttagtgt
     2881 tgcagatgtc caggccactc tgcatgggat gcgctctgcc cccagctact tggacagtgc
     2941 aaccagagac ccctctacct ctgtcccaga cttcaaggcc caccaatccc ctcagacaat
     3001 ggaggggaaa aagagcccag aacatttggg gcttccccaa aaccagagtg cccaggccct
     3061 tgagatgccc aatggttcta ccccaggagg gcccattaca tcgggttctc agtagctgcc
     3121 tggtggcagc ggtggccaag tcctctgtcc tccctgtgga gttcctcagt ggggcaggat
     3181 gagtcctttg gtggccctct attccattgt cccataccct gcattctctc ctctggactc
     3241 ccagggaggc tggtgccagg gagatgccct tacccacccc catttgcact gagaagagaa
     3301 actatggagt ttttcctcca agaataaaga tagagagtca catagagaga aaggagagag
     3361 agagagagag agagagagag agagagagag agagagagaa tattatatat attatatata
     3421 tattatatat atattatata tatatatata gagagagaga tagatattga gggaggagta
     3481 agaaaggaag ccaggacaag aactgggcca gcagctctga agcacaacct ccctgtcttt
     3541 cccagtaggg gttggtgctg gggtttgaag ccgctgacct gtgctctggt gcagatgctc
     3601 acatccagcc tttcactcag gatcaccgtg gggtgtaaca gaggacatcg ggcccaaatg
     3661 gccatgcgtt tgtctagacc ttgcactttg accagtcatc tggcctctgg ccctggggaa
     3721 cacggcctcc ctggcaatag ccccagagtc ccagaatgga ggttgctgga tctcccatac
     3781 cctgagggtc ccagcactgc tgccaagtgg ccttgtccca gctccctccc caaggctggt
     3841 gtgagtgtgc aagtatgtgt gcagagcttg tgtttcatac tgcaaatata aataaaggaa
     3901 gatagcagaa gattcctagt gtgggctttt gagttcctgg gactcagagt tgggtgaaca
     3961 tgctctccat ggcctagaga gctacattct ctttggaaca cacttgtgag agtgtgtatg
     4021 ggtgcagagg gatgaagaat atgtatacac caggcaggaa catcaggaaa agggtaccag
     4081 ccttgttgag ttagcacttt ggggctctct catcttgatg tgcacttcct tagccctgtt
     4141 ctaaaatgca gatcagctta tgactgtgtt gagttagctt atagccccct tacctctatc
     4201 ctcctctaac agaccttgga gctgactttc ctgccattga gggatagacg gtagcaggtg
     4261 tggtggtgca tataagagtc aggctcagcc tggtctacca aggacagcca gagctcagca
     4321 gagaaaccct gactcaaaaa caaaa
//
