LOCUS       NM_001127569            1420 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus protein phosphatase 1, regulatory subunit 42
            (Ppp1r42), mRNA.
ACCESSION   NM_001127569 XM_001066290 XM_039110783
VERSION     NM_001127569.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1420)
  AUTHORS   Wang,R. and Sperry,A.O.
  TITLE     PP1 forms an active complex with TLRR (lrrc67), a putative PP1
            regulatory subunit, during the early stages of spermiogenesis in
            mice
  JOURNAL   PLoS One 6 (6), e21767 (2011)
   PUBMED   21738792
REFERENCE   2  (bases 1 to 1420)
  AUTHORS   Wang,R., Kaul,A. and Sperry,A.O.
  TITLE     TLRR (lrrc67) interacts with PP1 and is associated with a
            cytoskeletal complex in the testis
  JOURNAL   Biol Cell 102 (3), 173-189 (2010)
   PUBMED   19886865
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1420)
  AUTHORS   Wang,R. and Sperry,A.O.
  TITLE     Identification of a novel Leucine-rich repeat protein and candidate
            PP1 regulatory subunit expressed in developing spermatids
  JOURNAL   BMC Cell Biol 9, 9 (2008)
   PUBMED   18237440
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On or before Oct 27, 2021 this sequence version replaced
            XM_039110783.1, NM_001127569.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.1491095.1,
                                           SRR26360194.726688.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-72                JAXUCZ010000005.1  14010022-14010093
            73-290              JAXUCZ010000005.1  14015263-14015480
            291-457             JAXUCZ010000005.1  14018560-14018726
            458-596             JAXUCZ010000005.1  14019127-14019265
            597-713             JAXUCZ010000005.1  14029534-14029650
            714-831             JAXUCZ010000005.1  14038575-14038692
            832-963             JAXUCZ010000005.1  14043744-14043875
            964-1117            JAXUCZ010000005.1  14049369-14049522
            1118-1420           JAXUCZ010000005.1  14057028-14057330
FEATURES             Location/Qualifiers
     source          1..1420
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q11"
     gene            1..1420
                     /gene="Ppp1r42"
                     /note="protein phosphatase 1, regulatory subunit 42"
                     /db_xref="GeneID:683514"
                     /db_xref="RGD:1585679"
     exon            1..72
                     /gene="Ppp1r42"
                     /inference="alignment:Splign:2.1.0"
     exon            73..290
                     /gene="Ppp1r42"
                     /inference="alignment:Splign:2.1.0"
     CDS             162..1229
                     /gene="Ppp1r42"
                     /codon_start=1
                     /product="protein phosphatase 1 regulatory subunit 42"
                     /protein_id="NP_001121041.1"
                     /db_xref="GeneID:683514"
                     /db_xref="RGD:1585679"
                     /translation="MVRLTVDLIAKNSNLKPRKEETLVQCLKKITHINFSDRNIDSID
                     DLSLCKNLSVLYLYDNRISQVTNLNYTTNLTHLYLQNNCISCIENLSSLKKLEKLYLG
                     GNYIAVVEGLEGLEELRELHVESQRLPLGEKLLFDPRTLRSLAKSLSTLNISNNNIDD
                     IKDLEMLENLNHLIAVDNQLMHVKDLEVLLRKLMKLWKMDLNGNPVCLKPKYRDRLIL
                     MSKSLEFLDGKEIKNLERQFLMNWKASKEAKKISKKRRNRSEDQNNSYISNFETIHHI
                     VPVYYPQVGKPKVVFFSDVQRYLGKASSKFSQEDKTTITEDIGNLSLKESESLLTKTD
                     IHEPHLLQNPKVKENLSENKE"
     exon            291..457
                     /gene="Ppp1r42"
                     /inference="alignment:Splign:2.1.0"
     exon            458..596
                     /gene="Ppp1r42"
                     /inference="alignment:Splign:2.1.0"
     exon            597..713
                     /gene="Ppp1r42"
                     /inference="alignment:Splign:2.1.0"
     exon            714..831
                     /gene="Ppp1r42"
                     /inference="alignment:Splign:2.1.0"
     exon            832..963
                     /gene="Ppp1r42"
                     /inference="alignment:Splign:2.1.0"
     exon            964..1117
                     /gene="Ppp1r42"
                     /inference="alignment:Splign:2.1.0"
     exon            1118..1420
                     /gene="Ppp1r42"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgccgctggc tttgtaggag cccggtacag ggacactgac caaaccagtt acagaccgga
       61 ctggacagag cgttttagaa agtggacgtg atacctaagc ctgcttctgg acatgctgtc
      121 aaagtggagc tttcgctgag agtttgactt atgcagaaac tatggttcga ctgacagtgg
      181 atttaattgc caaaaacagc aatcttaaac ccagaaaaga agaaaccctt gtacaatgcc
      241 tgaagaaaat aacacacata aatttttcag acagaaatat agattcgatt gatgacctct
      301 ctctttgtaa aaacctgagc gttttatatt tgtatgataa tcgcattagt caagtcacta
      361 acctgaatta caccacaaat ctgacccact tgtacctaca gaacaattgc atttcctgca
      421 tcgaaaacct cagttcacta aagaaattgg aaaaactgta tctgggaggc aattacattg
      481 cagtcgtcga aggcttggaa ggattagagg agctgagaga gcttcatgtt gaaagtcaga
      541 ggctccccct gggagaaaag ctcctgtttg acccaaggac tcttcgttct ctagcaaaat
      601 ccctctctac tttgaatatc agcaacaata acattgatga cataaaagat ttagagatgc
      661 tggagaatct taatcacctg attgcagttg acaaccagct gatgcacgtg aaggacttgg
      721 aagttttact gagaaaactg atgaagttgt ggaaaatgga tttaaatgga aatcctgttt
      781 gtcttaaacc aaaatacagg gacaggctga tactgatgtc caagtcactg gagtttcttg
      841 atggaaaaga aataaaaaac ctggaaagac aattcctaat gaattggaaa gcatccaaag
      901 aggccaagaa aatcagcaag aaaaggagga acagaagtga ggatcaaaac aactcctaca
      961 taagtaactt tgaaacaata catcacatag ttcctgttta ttacccacag gtgggtaagc
     1021 caaaagtagt ctttttctct gatgtacaga gatatcttgg aaaggcatct tcaaagtttt
     1081 ctcaagaaga taaaactaca attactgaag atatagggaa tctatccttg aaggaatctg
     1141 aaagcttgct aacaaaaacc gatatccatg aacctcacct tctccaaaac ccaaaagtaa
     1201 aggaaaattt gtctgagaat aaggagtaaa ttctgcctcc agtgatttga tttcttcata
     1261 gaacgaggca acagcgtgtt ttgagggttt atagacttcg tttatcttgg tgtgtatgtt
     1321 gtttttttct ttatagaatc tgagactttg ctttatgtgt gtgaattctg ggatctattt
     1381 actctattag ctgttaaata aaatttacca ggaaataaaa
//
