LOCUS       XM_006228495            4310 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus protein phosphatase 1, regulatory
            subunit 13 like (Ppp1r13l), transcript variant X1, mRNA.
ACCESSION   XM_006228495
VERSION     XM_006228495.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006228495.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006228495.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4310
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4310
                     /gene="Ppp1r13l"
                     /note="protein phosphatase 1, regulatory subunit 13 like;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 24 ESTs, 1 long SRA read, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:686781"
                     /db_xref="RGD:1593681"
     CDS             1250..3772
                     /gene="Ppp1r13l"
                     /codon_start=1
                     /product="relA-associated inhibitor isoform X1"
                     /protein_id="XP_006228557.1"
                     /db_xref="GeneID:686781"
                     /db_xref="RGD:1593681"
                     /translation="MISPSAQRHPAPAGTMDSEAFQQARDLLDLNFQSLAMKHMDLKQ
                     MELDTAAAKVDELTKQLESLWSDSPAPPGTQAGVPSRMSRYSTSPVPEHFGSRGSLQK
                     IAADGVEARFGRSESAPSLHPYSPLSPKGRPSSPRTSIYLQPTTPDPYSSLDRAPSPR
                     PRAFEGTGSPHGRAPSPRPGTGPVRQPGPPTPFDYLGRAGSPRGSPLAEGPQAFFPER
                     GPSPRPPAAAYDTSATFGSPLLGAGGSAFAPPLRAQDDSTLRRRPPKAWNESDLDVAY
                     EKKSSQTASYERLDVFTRPASPGLQLLPWRESSLDGLGASGKDNITSATLPRNYKVSP
                     LASDRRSDVGSYRRSMGSAGPSGTLPRSWQPVSRIPMPPSSPQPRSTPRQRPIPLSMI
                     FKLQNAFWEHGASRAVLPGSPIFSRAPPPKLPPQPPPQPQLPPQPQPQMPPQSQPQPQ
                     TPVPQQTWSPMNEGLLKSPAELEPEPELEGLLAPVLESGDADEGTVTRPLSPTRLQPA
                     LPPEAQTVPELEEVARVLAEIPRPLKRRGSMEQSPAAALPPTHKKQYQQIINRLFHRH
                     GGPGPGGPEPELSTITEGSEARAGPPAPAPPAPIPPPAPAQSNPPEQPQSMEMRSVLR
                     KVGSPRKARRARLNPLVLLLDAALTGELDVVQQAVKEMNDPSQPNEEGITALHNAICG
                     ANYPIVDFLIAAGANVNSPDSHGWTPLHCAASCNDTAICTALVQHGAAIFATTLSDGA
                     TAIEKCDPYREGYADCATYLADVEQSMGLMHNGVVYALWDYSAEFGDELSFREGESVT
                     VLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKSQRSKI"
ORIGIN      
        1 cccgccaccc cagaacccga caccgcgtcc ctgggaggac ttgatggaaa ctaggaccat
       61 aggtccaggg gaatagtgtg gggagctcac ggctggatca ctggaaagaa ggaactgggg
      121 tgctgacttt actgggcagc tggatgggga cttgggacac ctgcgatctt agtggtgctc
      181 ggagcccttg gtcgtgagta gttattggag ctggaatttt ttaaaacttt aattggagac
      241 tcttggaagt gtcttagagt gctgttgggg tctccggtct ctgaattttg ggtagatgtg
      301 ggagatcagg acgttctaga atggtcgggc acccggttac cttctagctg ccttcagcac
      361 tgaatcacta gatctttgag taaaattagt ggcactggaa tcgtggatcc tggtttttta
      421 agagtagggc aagcacgagg ggcgtgggtt tctcaggagg ccgtgttcca gtgctacacc
      481 ccactttctg gttttgggat gggggcaggg agtgagaaac cggggcagct ctccaacctc
      541 ttctgtgctg ctgagcgaac cccagcatgt cattaactgg ggcgtcagac ctgcctaacc
      601 agaggaggca catccgccca agagcgcccc caagcggaaa cgggagtcag acttcttatt
      661 gccccacggg gtgggaaata ggtggggttt gctgaggtca ttctagaaca cagggcagaa
      721 taacaggacc acggggctgg atctgggagg cttccgtggc catgtactgc tgcgttgcag
      781 agaatggaag tggtaaactg aggctggtgg gccatacagg cagttgaatt tgacatctcc
      841 ttcactcttg tgacagctgt ctgtggaagg aattccttca ctcccaccag actttctaag
      901 taaccttctt tctccctggg tggggttcct tgtgacccag aggtgagaca tgtcgcctcc
      961 acttccatct gtctgacctg aggtattgtg ggagataagg agggagggag gctaattctg
     1021 gaggtgtctg tctgtccttg agccagagag agggcagggg cgggaaggca cctccctcca
     1081 tcgctgtgcc cttatgtagg gggattacga agctagtggg gggacaagga tctgaagagg
     1141 gagggtgttt gctaatgcct gggttggaat gacagcccga aatgaagctg aggaagaata
     1201 ggcagagctg ccaacacagc tgtgtccgtc ctgccaggct caggtcggga tgatctctcc
     1261 gtccgcacag aggcaccctg ctccggctgg caccatggac agcgaggcat tccaacaggc
     1321 gagggacctt ctggatctga acttccagtc gctggccatg aagcacatgg atctgaaaca
     1381 gatggagctg gacaccgctg ctgccaaagt ggacgaatta accaagcagt tggagtcgtt
     1441 gtggtcagac tcaccagctc ctcctggcac acaggctgga gttccctcta ggatgtcccg
     1501 gtacagcact agccctgtcc cggagcattt tggcagcaga gggtccctac agaagatagc
     1561 cgccgatggc gtagaggctc gttttggacg ctcagagagt gccccgtccc tgcaccctta
     1621 cagccctctg tctcccaagg gccgtccgtc ctcgccgcgc acctccatct acctgcagcc
     1681 tacaacacct gacccctaca gcagcctgga tcgggcgcca tcgcccagac cccgcgcctt
     1741 cgagggaaca ggcagtcccc atggtcgggc gccgtccccg cggccgggga ctggcccagt
     1801 gcggcagccg ggtcccccga ccccttttga ctacctaggc cgcgcagggt ccccccgggg
     1861 cagcccacta gcagaggggc cccaggcctt cttcccggag cgaggacctt ccccacgccc
     1921 gcccgctgca gcctatgaca catcggccac gttcgggagc cctctgctgg gcgcgggtgg
     1981 cagtgccttc gccccgccac ttcgcgcaca agatgactcg acgctgcgcc ggaggccccc
     2041 gaaagcctgg aacgagtctg acctggatgt agcctacgag aaaaagtctt cacagacagc
     2101 aagctatgaa cggctggatg tcttcacgcg gcctgcctcg ccaggcctgc agctcttacc
     2161 ctggagagag agcagcctgg atgggctggg ggccagtggc aaggacaaca tcaccagcgc
     2221 cacattgcca cgcaactaca aggtgtcccc tctggccagt gacaggcgtt ctgatgttgg
     2281 cagctaccgc cgctccatgg gctctgcagg gccctcaggc actttgcccc gtagctggca
     2341 gcccgtcagc cgcattccca tgcctccctc cagccctcag cctcgcagta ccccgcgcca
     2401 gcgccccatc cccctcagta tgatctttaa actccagaat gctttctggg aacatggagc
     2461 cagcagggct gtgctcccgg gatcccccat cttctcccga gcacccccac ctaagctgcc
     2521 tccccagcca ccccctcagc cccagctgcc accccaaccc caacctcaga tgccccccca
     2581 gtcccagcct cagcctcaga ctccagtacc tcagcagact tggtccccca tgaatgaagg
     2641 cctcctcaaa tcccctgccg agctggagcc agagcccgag ctggagggac tactggctcc
     2701 cgtgctggag tccggggatg cagatgaagg caccgtcacg cggcccctca gccctaccag
     2761 gctgcagcca gcgctgccac ccgaagcaca gaccgtacct gagctggaag aggtggcccg
     2821 agtgctggca gagattcctc gacccctcaa acgcagaggc tccatggagc agagccctgc
     2881 tgccgccctg cctcccaccc acaagaaaca gtaccaacag atcatcaata gactcttcca
     2941 tcgtcatggt ggcccagggc ctggagggcc tgagcccgag ctgtctacaa ttacagaggg
     3001 atctgaggcc agggcagggc cccctgctcc cgcccctcca gctcctatcc cacccccagc
     3061 cccagcccag agcaaccctc cagagcagcc tcagagcatg gagatgcgct cagtactacg
     3121 caaagtaggg tccccacgca aggctcggcg cgctcgcctc aacccactgg tgctgctgtt
     3181 ggatgcagcg ctgactggag agctggacgt ggtacagcag gcggtgaagg agatgaatga
     3241 cccaagccag cccaacgagg agggcatcac tgccctgcac aatgccatct gcggtgccaa
     3301 ctaccccatc gtggacttcc tcatcgccgc gggcgccaat gtcaactccc ctgacagcca
     3361 cggctggacg ccactgcatt gtgccgcttc ctgcaacgac actgccatct gcacggcact
     3421 ggtgcagcac ggtgcggcca tcttcgccac tacactcagt gatggcgcca ccgccattga
     3481 aaagtgtgac ccttatcgtg agggatacgc agactgtgct acctatctgg cagacgtcga
     3541 acaaagcatg ggactgatgc acaatggcgt tgtgtatgcg ctctgggact acagcgcaga
     3601 gtttggggat gagctgtcct tccgggaggg cgagtcagtc actgtgctgc ggagagacgg
     3661 gccagaggag accgactggt ggtgggctgc actgcacggc caggaaggct atgtgccgcg
     3721 caactacttc gggctcttcc ctagagtgaa gtctcagcgg agcaaaatct agtaggaatg
     3781 aaggatgatc gtaaaggaga aaagtgcacc gccagcctgc cttccaccca gacctgcccg
     3841 atccatctaa ctaatctgcc gctattcttc agaggttctg cctgcaccgg aaattctctg
     3901 ctcaagggcg gctcaaggga gggcagcccc agactgaaga ttatgaagct gccttaagca
     3961 ttggggtgag gttgggctgg ggacatttgg gggcaggaac tcccacccca cccccaacac
     4021 acacacttgc caaatcagat ctggttctaa gtgcctccta ctggcagcaa gccactgcac
     4081 tatcccagct gagcctggga ggctacccac cccttcattt ctctctgagt cctttcttcc
     4141 tctcacctgg aagtccccgt tcttcccagc agcctccatt tctcccagaa gccttggggc
     4201 ctgtgtgagg cccccatctc cccaaccaag tgccttcaca ccatgtggct tactgtttat
     4261 aatgacgcgg aaactgtttc ctttataaat aaaggtcgtt tgcccagcaa
//
