LOCUS       XM_006250243            1502 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus protoporphyrinogen oxidase (Ppox),
            transcript variant X4, mRNA.
ACCESSION   XM_006250243
VERSION     XM_006250243.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006250243.3.
            
            On Jan 21, 2021 this sequence version replaced XM_006250243.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1502
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1502
                     /gene="Ppox"
                     /note="protoporphyrinogen oxidase; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 8 ESTs, 1 long SRA read, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 158 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:289219"
                     /db_xref="RGD:1310543"
     CDS             157..1458
                     /gene="Ppox"
                     /codon_start=1
                     /product="protoporphyrinogen oxidase isoform X3"
                     /protein_id="XP_006250305.1"
                     /db_xref="GeneID:289219"
                     /db_xref="RGD:1310543"
                     /translation="MVRSLNLDLEELGRLEPWEPGPCSWACGEQVSELGLESEVLPVR
                     GDHPAAQNRFLYVGGALHPLPSGLRGLLRPSPPFSKPLFWAGLRELTKPRGKEPDETV
                     HSFAQRRLGPEVASLAMDSLCRGVFAGNSQELSIRSCFPSLFQAEQTHGSMLLGLLLG
                     AGQTPQPNSSLIRQARAERWSQWSLRGGLEMLPQALHNYLTSKGVTILSGQPACGLSL
                     QPEGHWKVSLGDSSLEADHIISTIPASVLSKLLPAEAAPLAHILSTIQAVSVAVVNLQ
                     YKGACLPVQGFGHLVPSSEDPTVLGIVYDSVAFPEQDGNPPGLRLTVMLGGYWLQKLK
                     ANGHELSPELFQRAAQEAAATQLGLKEQPSHCLVHLHKNCIPQYTLGHWQKLDSALQF
                     LTAQRLPLTLAGASYEGVAVNDCIESGRQAAIAVLGTESNS"
ORIGIN      
        1 gccttacgat ggcccggact gtgatagtgc ttggcggagg tatcagcgga ttggccgcaa
       61 gttatcatct gacccgaagc cccagtcctc ctaaggtgat cttagtggag ggcagcaaac
      121 gtttgggagg ctggatccgt tcagtccgag gatcagatgg tgcgatcttt gaacttggac
      181 ctcgaggaat taggccggct ggagccctgg gagcccggac cctgctcctg ggcttgtgga
      241 gagcaggttt ctgaacttgg cttggaatcc gaagtcttgc ctgtccgagg ggatcatcca
      301 gctgcccaga accggttcct gtatgtaggc ggtgccctgc accccctacc ctctggcctc
      361 agggggctac ttcgtccttc accccccttc tcaaaacctc tattttgggc tggactgagg
      421 gagttgacga agcccagggg caaagagcct gatgagactg tgcacagttt tgcccagcgc
      481 cgccttggac ctgaggtggc gtctctggct atggacagcc tttgcagagg agtgtttgct
      541 ggcaacagcc aagagctcag catccggtcc tgctttccca gtctcttcca agctgaacaa
      601 acccacgggt ccatgttact ggggctgctg ctgggggcag ggcagactcc acagcccaat
      661 tcctcattaa ttcgtcaggc ccgcgctgag cgatggagtc agtggtcact ccgtggaggg
      721 ctggagatgt tgccccaggc ccttcataac tacctaacaa gtaaaggggt cactatcctc
      781 agtggtcagc cagcctgcgg gctcagcctt cagccagaag ggcactggaa ggtgtctcta
      841 ggggacagca gtctggaggc tgaccacatt ataagcacca ttccagcttc agtgctcagc
      901 aagctgctcc ctgccgaggc tgcacctctg gctcacatcc tgagtaccat ccaagctgtg
      961 tctgtggccg tggtgaatct gcagtacaaa ggagcttgtc tgcctgtgca gggatttgga
     1021 catctggtgc catcctcaga agacccgacc gtcctgggaa tcgtgtatga ctcggttgct
     1081 tttcctgagc aggatgggaa ccccccaggc ctcagactga ctgtgatgtt gggaggttac
     1141 tggttacaga agctgaaagc caatggccat gaattgtctc cagagctatt ccaacgagca
     1201 gcacaggaag cggctgccac acagttagga ctgaaagagc aaccaagcca ttgcttggtc
     1261 catctacaca aaaactgtat ccctcagtat acactaggcc actggcaaaa actagactca
     1321 gctctgcaat tcctgacggc ccagaggttg cccctgactt tggctggggc ctcctatgag
     1381 ggggtagctg tcaatgactg tatagagagt gggcgccagg cagcaattgc tgtcctgggc
     1441 acagaatcga acagctgacc cccactctcc tactcatgaa agtaaaagtt gatggagctt
     1501 gg
//
