LOCUS       XM_039082615            4723 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus protein phosphatase, Mg2+/Mn2+
            dependent, 1M (Ppm1m), transcript variant X1, mRNA.
ACCESSION   XM_039082615
VERSION     XM_039082615.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039082615.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4723
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4723
                     /gene="Ppm1m"
                     /note="protein phosphatase, Mg2+/Mn2+ dependent, 1M;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 28 ESTs, 1 long SRA read, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 230 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:686298"
                     /db_xref="RGD:1584266"
     CDS             1979..3535
                     /gene="Ppm1m"
                     /codon_start=1
                     /product="protein phosphatase 1M isoform X1"
                     /protein_id="XP_038938543.1"
                     /db_xref="GeneID:686298"
                     /db_xref="RGD:1584266"
                     /translation="MRGYIPFLQMAKLAAHPRADGRGRGLSPQAPPPARFLTVAGRTL
                     ASRCARAAPGRHAMSAGWFRRRFLPGGPLPEPRPPGPRSSPVPYHRPRFLRGSGSSPG
                     ANDASRRPDARPVRSPARGRTLPWNAGYAEIINAEKSEFNEDQAACGKLCIRRCEFGI
                     EEDQEWLTVCPEEFLTGHYWALFDGHGGPAAAILAANTLHSCLRRQLEVVVEGMMAAQ
                     PPMHLSGRCVCSSDPQFVEEKGIRAEDLVIGALENAFQECDDVIGRELEASGQVGGCT
                     ALVAVFLQGKLYVANAGDSRAILVRRDEIRLLSSEFTPETERQRIQQLAFTYPELLAG
                     EFTRLEFPRRLKGDDLGQKVLFRDHHMRGWSYKQVEKTDLKYPLIHGQGRQARLLGTL
                     AVSRGLGDHQLRVLDTDIQLKPFLLSIPQVTVLDVDQLALQEDDVVVMATDGLWDVLS
                     NEQVALLVRSFLTGNREDPHRFSELAKMLIHNTQGKDGGASGEGQVSYDDVSVFVIPL
                     SSQAQESGGH"
ORIGIN      
        1 agcggtagag cacttgccta gagagcacga ggccctgggt tcggtcccca gctccggaaa
       61 aaaaaaaaaa aaagaaaaaa aaaaaaagga aacaggctac acacaaagat aaatgctgtc
      121 ccacaagtct ataaggagct gcttgccctg tcagtaatca ctaaggaaga gaaatgaaaa
      181 ctgaactgta tttggaattt tatttatctg taggcaaaaa atttttaaag ctttgataag
      241 aatcgtgatt gtcaaggatg ggaaaatggt ctatgcaagc ttatgtaaaa caatgtgata
      301 agatcttgat tgtaaaatta tctaggtgtg gaacctttga gcttgtcagt gagggcattt
      361 ccggaaaggt ttagcaggag ggaagaccag ctcagaatgt cagcagcacc ccactgtgag
      421 ctggggtctg aacaataagt cacctcttcc tggtggcaga cacacgtgac cagctgcctc
      481 atattcctga ctatcttgct tctgctgtga tggacttgac aagctatttc ttcctatagt
      541 tgcttttagc agatactttg ttacgggaag aactaaagta accaagctga actgtatgta
      601 ccaaattatc atatgtatcc ttctctttcg atcgaagcag gggttggggg tggggagtga
      661 ctggctgtag ctttctcaga ccttgtcccc attcacagct gggtcaggaa ctacctatca
      721 gaactgctat cacttctggg cttagcagtc cctctattag cgccgtgctc ctctgcccag
      781 tgtaaggctg ttactgggtg ggctcagtag gttagccacc ccacccccca cggccacccc
      841 cacccccgcc cccgcgttac aggggatgca gctgtttcag aagaaccttc ctcctcagcc
      901 aggaggaact gctgtcaggc aacagggctg actgattaaa ggaagaggcc tagtgagcac
      961 tagccggggc ttaggagcag agggaacgcc tcatccatcc atccatcctt aggccttaga
     1021 gattttgaat tggtttcctg gaggagaaaa gaggaagcaa aatcgcttga ggggtggtct
     1081 gactcagcta cactgtcata ctggaaaccc tgggcatcta acacttcccc tctgtgggtc
     1141 tgagtcttcc cttgtgaagt ggaaattgca gccttgcaga ggggcaccta gacttaggtg
     1201 acggaaagtg acagccagcc actctaagag ttatagctac ctaggggtta agagacatcc
     1261 tggagggttg gggatttagc tcagtggtag agcacttgcc tagcaagcgc aaggccctgg
     1321 gttcggtccc cagctccggg gaaaaaaaaa agaaaaaaaa aaaaaaaaga gagacatcct
     1381 gggccagagg atgacacctg cctgtgattg cagtatgcaa aaggcagagg ccagcctggg
     1441 gctacctggt gagcaccttc tcaaaataag agatgttggt gaaattcttc atgttcctca
     1501 gtccaaggct gcacctttcg ccagctggag aaaggaacta cattccccta taggttcctt
     1561 ttgtccgtca ctcacactcc agggaggatc ttgtgcagtc gagaagccat cttaactgta
     1621 ggggcagaca tttgggagcg ggcttctgag gatgaggaca agggtgtaca gaactctgga
     1681 atattgagca cgctcttact caatatgtcg gcctcacacc tccaaggcca tactgtcccg
     1741 gtcttccccc ttgcgtaaga ccgtggctag cagagcaagg ctgatgctgt gcgtagcacc
     1801 tgcccagcac ccattctaga gaactctctg aggttcctag agtgaaggga agggcttccc
     1861 ctctcagaag atcaagtccc acaggtgcgg gtgagccttt gtgccttctc agtggtactc
     1921 tgacggaggc aggaggcttc acctcgctag gcctcggtta tcctgcctgt aaagtggcat
     1981 gcgtggctac attcccttct tacagatggc caaactggcc gcacacccta gggcggatgg
     2041 acgggggcgt ggcctctcac cccaagctcc acccccagcc cgcttcctca ccgtagcggg
     2101 ccggaccctg gcgtcccgct gtgcgcgggc agcccccggc cgccacgcaa tgtccgccgg
     2161 ctggttccgg cgccgcttcc tacccggggg tccacttcca gagccgcggc cacctggacc
     2221 acgctccagt ccggtgccct atcaccggcc ccgtttcctg cggggctctg ggtccagccc
     2281 tggcgccaac gacgcttcgc gccgcccgga tgcccggcca gtgcgcagcc cagcacgggg
     2341 ccgcacgctg ccttggaacg ctggctacgc cgagattatc aatgcagaga aatctgaatt
     2401 caacgaagac caggctgctt gtgggaagct gtgcatccgg cgatgtgagt ttgggatcga
     2461 ggaagatcag gagtggctga cggtgtgccc agaggagttc ctgacaggtc actactgggc
     2521 actgtttgat gggcatggtg gacctgccgc agctatttta gctgccaaca ccctgcactc
     2581 ttgcctccgc cgacagctgg aggttgtggt agaaggcatg atggccgctc agccccccat
     2641 gcacctcagc ggccgctgtg tctgctccag cgacccacag ttcgtggaag aaaaggggat
     2701 ccgggcagaa gacttggtga ttggggctct ggagaacgcc ttccaggaat gtgatgatgt
     2761 gatcgggaga gagctggagg cctcaggcca ggtgggtggc tgtacagctc tggtggcagt
     2821 gttcctgcag gggaagctgt atgtggccaa tgctggggat agcagggcca tcttggtgcg
     2881 gagagatgag atacggctgc tgagttctga attcactcca gaaacagagc ggcagcggat
     2941 ccagcagctg gcctttacct accccgagct tctggctggt gagttcaccc gactggagtt
     3001 tccacggcgg ctgaaggggg atgacttggg gcagaaggtt ctgttcaggg atcatcacat
     3061 gagaggctgg agctacaaac aggtggaaaa gactgatctg aaatacccac tgattcatgg
     3121 acagggtaga caggctcggt tactgggaac actggctgtc tccagagggc tgggagacca
     3181 tcagcttaga gtcctggaca ccgacatcca gctcaagccc ttcctgctct ccatcccgca
     3241 ggtgactgtg ctggatgtag accagctggc attgcaggag gatgatgtgg ttgtcatggc
     3301 aactgacggg ctctgggatg tcctgtccaa tgagcaggtg gcactgcttg tgcggagctt
     3361 cctcactggg aaccgagagg acccacacag gttctcagag ttggccaaaa tgctgataca
     3421 caacacacaa gggaaggacg gtggtgcctc cggagaaggg caggtgtctt acgatgatgt
     3481 ctccgtgttc gtgattcctc tgagcagcca ggcccaagag agcggtggcc actgaggatt
     3541 cagatactgc attctagaac cccttcagga ccaatgcaga ctcagcatac acccatcatg
     3601 gccaagagca ggctctgcct ggcctgttcc aagccacagc ccagcgctca ccaggtccca
     3661 ccttctgcat ggtaacattt ccgctggcag aggtacttta tagcatatgg tttctgtgtt
     3721 ggcccctctg caggataaag ggtactagga agccctgggg aacaagcagc ttgtttggtt
     3781 ccagtccgtg aaatctctgg ttatttattt aaccatttat ccatccatcc acacaaggca
     3841 ccttcttgaa accactgagc aggctcacat ttgcttaatt taattaagat taaagcaatc
     3901 taaatttttc ttttctctct ctttttttaa aagatggggt ctccgttatg tagttccggc
     3961 tgtcctggaa cttgcttata gaccaggctg gcttcaaact cagagatcac ctgcttttgc
     4021 ctcctgagca ctgggattaa gtgtgctggg ctagatctgc catcttgaga acagttcctg
     4081 aaacctgttc agagcctgcc ttgccctctg ccagtgaagg gcacaggtcc cagacagtct
     4141 gtagagaaaa tgggtgagaa gtctccagca ttggcggggc tgactgtcac tgcctggagc
     4201 ccgcctgcca tctggttgct ttccctgagt cccaggcctg ccctacacac caacagtgtc
     4261 tgtgctgttc tcagtcatgc caagtacaaa cacttctcag caagctcgtt ctccatgttt
     4321 ccaaccttcc acttttagcc agcctagcgc tatccccacc cactctggtg ctgctctcct
     4381 gcccactctc gtaccagcct ccaaagacgc acacatcttc tacccctggc attggccaca
     4441 gatagcattc tcttcaggga cccagccaac atgttattaa atgtttgcat gtgaaagccc
     4501 ccatgaatca ggaattgctc acacagccct ggctgacaat tttgccattt cttgtggcct
     4561 ctcagtggat tctttttcgt tctaccatgc aaacctgcaa acgatcagga ctggtcccat
     4621 gctcagcccc ctcgctgctg ccaggaaatg agaagacctg tgaactctgg attggaggca
     4681 ccggaagggc tgccttttta ctttaaaaaa aaaaagtttt gca
//
