LOCUS       NM_001107863            2624 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus protein phosphatase, Mg2+/Mn2+ dependent, 1K
            (Ppm1k), mRNA.
ACCESSION   NM_001107863 XM_001064332 XM_231833
VERSION     NM_001107863.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2624)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2624)
  AUTHORS   Pagliarini,D.J., Calvo,S.E., Chang,B., Sheth,S.A., Vafai,S.B.,
            Ong,S.E., Walford,G.A., Sugiana,C., Boneh,A., Chen,W.K., Hill,D.E.,
            Vidal,M., Evans,J.G., Thorburn,D.R., Carr,S.A. and Mootha,V.K.
  TITLE     A mitochondrial protein compendium elucidates complex I disease
            biology
  JOURNAL   Cell 134 (1), 112-123 (2008)
   PUBMED   18614015
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474011.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001064332.1, XM_231833.4.
            
            ##Evidence-Data-START##
            CDS exon combination :: FQ211521.1 [ECO:0000331]
            RNAseq introns       :: single sample supports all introns
                                    SAMD00132267, SAMD00132274 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2624
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q24"
     gene            1..2624
                     /gene="Ppm1k"
                     /gene_synonym="BCKDH; BDP; RGD1308501"
                     /note="protein phosphatase, Mg2+/Mn2+ dependent, 1K"
                     /db_xref="GeneID:312381"
                     /db_xref="RGD:1308501"
     exon            1..211
                     /gene="Ppm1k"
                     /gene_synonym="BCKDH; BDP; RGD1308501"
                     /inference="alignment:Splign:2.1.0"
     exon            212..729
                     /gene="Ppm1k"
                     /gene_synonym="BCKDH; BDP; RGD1308501"
                     /inference="alignment:Splign:2.1.0"
     CDS             290..1408
                     /gene="Ppm1k"
                     /gene_synonym="BCKDH; BDP; RGD1308501"
                     /EC_number="3.1.3.16"
                     /EC_number="3.1.3.52"
                     /note="protein phosphatase 1K, mitochondrial; protein
                     phosphatase 1K (PP2C domain containing); protein
                     phosphatase 2C family member; branched-chain
                     alpha-ketoacid dehydrogenase phosphatase;
                     [3-methyl-2-oxobutanoate dehydrogenase
                     (2-methylpropanoyl-transferring)]-phosphatase"
                     /codon_start=1
                     /product="protein phosphatase Mn(2+)-dependent 1K"
                     /protein_id="NP_001101333.1"
                     /db_xref="GeneID:312381"
                     /db_xref="RGD:1308501"
                     /translation="MLSTAFITLVRSGRNQVKKRVLLSSILLQDHRQMTPACYCSISE
                     PRCSRFDPDGSGQPATWDNFGIWDNRIDEPILLPPSIKYGKPIPKISLENVGCASLIG
                     KRKENEDRFGFAQLTEEVLYFAVYDGHGGPAAADFCHTHMEKCVTDLLPREKDLETVL
                     TLAFLEIDKAFSSYAHLSADASLLTSGTTATVALLRDGVELVVASVGDSRALLCRKGK
                     PMKLTTDHTPERKDEKERIKKCGGFVAWNSLGQPHVNGRLAMTRSIGDLDLKASGVIA
                     EPETTRIKLYHADDSFLVLTTDGINFMVNSQEICDFVNQCHDPKEAAHAVTEQAIQYG
                     TEDNSTAVVVPFGAWGKYKNSEITFSFSRSFASSGRWA"
     exon            730..830
                     /gene="Ppm1k"
                     /gene_synonym="BCKDH; BDP; RGD1308501"
                     /inference="alignment:Splign:2.1.0"
     exon            831..996
                     /gene="Ppm1k"
                     /gene_synonym="BCKDH; BDP; RGD1308501"
                     /inference="alignment:Splign:2.1.0"
     exon            997..1141
                     /gene="Ppm1k"
                     /gene_synonym="BCKDH; BDP; RGD1308501"
                     /inference="alignment:Splign:2.1.0"
     exon            1142..1276
                     /gene="Ppm1k"
                     /gene_synonym="BCKDH; BDP; RGD1308501"
                     /inference="alignment:Splign:2.1.0"
     exon            1277..2624
                     /gene="Ppm1k"
                     /gene_synonym="BCKDH; BDP; RGD1308501"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagaaacata ctcctccggg tctccatttg gccagctgcg gttgaaattt tttttcaaga
       61 atttccagga gtggaggagg ctgtggcttc tctaattgct tggtctggag atcagaatca
      121 acagagaact cagctttatt tatcatccaa gaaagccttc ccttccttcc attagccaat
      181 taagaaattt acagacacaa gccattacaa ggtacatcct ttttcttcaa ggaattctac
      241 tattgcccta tttgtctttc cctgtgactg gggcctttgg agttgcacta tgttatcaac
      301 ggccttcatt actttggtga gaagtggtag gaaccaggtg aagaagagag tgttgttaag
      361 ctccatcctc ctgcaggacc acagacagat gactcctgcc tgctactgct ccatttcgga
      421 gcccaggtgt tctcggtttg atccggacgg aagtgggcag ccagccactt gggacaattt
      481 tgggatctgg gataaccgca ttgatgagcc aattctgttg ccacctagca tcaagtatgg
      541 caagccaatt cccaaaatta gcctggagaa cgtgggctgt gcctccctca ttggcaaacg
      601 aaaagaaaac gaagatcgat ttgggttcgc acagttgaca gaagaggtgc tatactttgc
      661 agtctatgat gggcatggag gccctgcagc tgctgacttc tgtcacacac acatggaaaa
      721 atgtgttacg gatttgcttc ctcgggagaa agacttggaa actgtcctga ccttggcctt
      781 tctagaaata gataaagcct tttcaagtta tgcccacctg tctgctgatg caagcctcct
      841 gacctctggg actactgcaa cagtagccct gttgagagat ggtgttgaac tggtggtagc
      901 cagtgttgga gacagccggg ctcttttgtg tagaaaaggc aaacccatga agctgaccac
      961 tgaccatacc ccagagagaa aagatgagaa agaaaggatc aagaaatgcg gtgggtttgt
     1021 agcttggaat agcctgggac agccccatgt aaatggcaga cttgcgatga caaggagtat
     1081 tggagatttg gatcttaaag ccagtggtgt aatagcagaa cctgagacaa ccaggattaa
     1141 gctctaccac gctgacgaca gtttcctggt cctcaccacc gacgggatta acttcatggt
     1201 gaatagtcaa gagatctgcg actttgtcaa ccagtgccac gatcctaaag aagcagctca
     1261 tgctgtgact gagcaggcaa ttcagtacgg tactgaagac aacagcactg ccgtagtagt
     1321 gccctttggt gcctggggaa aatacaagaa ctctgagata accttctcat tcagcagaag
     1381 ctttgcctcc agcgggcgat gggcctgatc gtcagctcag agtcggtgtt cctgtgcagc
     1441 agtgtgccag tgggtttatc gagaaactgg taacacacag aaggccacct gtacccgtgt
     1501 gtcattgtaa cttgatagat cccaacagag tatatataag cttaccagcc gcacacccag
     1561 tagtattttc ataaatctgc ctcatcatta tggtcaactg cacatgctca gtgtaagcac
     1621 ggtcatcatt atggtcaact gcacatgctc agtgaaagca cggtaacaca gctgtgaagc
     1681 cgatgcgcat ctctgagctg agtgagagaa gaagcggttt tggtccattt gatgagtgat
     1741 aaatctattt ggctttctaa gtttttaaga ctaagaggca aatttagttt ctttttagta
     1801 aatttgttca ttattcagtt ggacagtttg ttttcttttt tttttttttt tttttttccc
     1861 ggagctgggg accgaaccca gggccttgcg cttgctaggc aagcgctcta ccactgagct
     1921 aaatccccaa ccccgacagt ttgttttcta aattttgatt gctagccaat ctgtttttgc
     1981 tagtgtttct ttttccattc tccgtagaaa gcaggtcctc actgactgac cttgaactcc
     2041 ggggttcaaa cagtcttcct cttcagcctt ttacctttta atttttaatt ttttttattt
     2101 ttttagagca gaacaagcat agatttattc aagaagtgtg agaaacatat acccaggaga
     2161 tggggaattc caagaaagga atacaagggt tgtttttaat taatgtacca aggagtgaaa
     2221 ataaaaccta ggttctctgt tacggtgtac tctggatcac ttattaagaa atttaaccct
     2281 gcaaaagaca tggctaaagt gtatacatat ttatagatag ctttcttgtg cccttcccca
     2341 tccatttcta tttttatgta gttaaatatg ctatatagtt gtaactgttc cttaatctcc
     2401 aagactgtac agactctttg gtcaaaatat gtaaagtgaa acactgacaa catcagtctt
     2461 atgtaagttt gctgctgtgt gttttgtgta tagtatgttt atatcacttt ctgtgcacac
     2521 agtaaacaat ttgagtcctt tattagtaaa gataatatta taacaactaa tactgttata
     2581 gacatagctt ggggttcatt ttccttgttt ctaagattta tgca
//
