LOCUS       NM_001395054            2946 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus peptidylprolyl isomerase like 4 (Ppil4), mRNA.
ACCESSION   NM_001395054 XM_039081048
VERSION     NM_001395054.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2946)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 2946)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On May 28, 2021 this sequence version replaced XM_039081048.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643284.22.1, SRR26643295.28.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-138               JAXUCZ010000001.1  4093977-4094114
            139-206             JAXUCZ010000001.1  4098097-4098164
            207-271             JAXUCZ010000001.1  4098249-4098313
            272-389             JAXUCZ010000001.1  4099793-4099910
            390-532             JAXUCZ010000001.1  4100414-4100556
            533-629             JAXUCZ010000001.1  4101557-4101653
            630-746             JAXUCZ010000001.1  4102453-4102569
            747-871             JAXUCZ010000001.1  4105515-4105639
            872-938             JAXUCZ010000001.1  4109060-4109126
            939-1050            JAXUCZ010000001.1  4111223-4111334
            1051-1147           JAXUCZ010000001.1  4113901-4113997
            1148-1295           JAXUCZ010000001.1  4117872-4118019
            1296-2946           JAXUCZ010000001.1  4124366-4126016
FEATURES             Location/Qualifiers
     source          1..2946
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1p13"
     gene            1..2946
                     /gene="Ppil4"
                     /note="peptidylprolyl isomerase like 4"
                     /db_xref="GeneID:361449"
                     /db_xref="RGD:1311051"
     exon            1..138
                     /gene="Ppil4"
                     /inference="alignment:Splign:2.1.0"
     CDS             69..1547
                     /gene="Ppil4"
                     /EC_number="5.2.1.8"
                     /note="peptidylprolyl isomerase (cyclophilin)-like 4"
                     /codon_start=1
                     /product="peptidyl-prolyl cis-trans isomerase-like 4"
                     /protein_id="NP_001381983.1"
                     /db_xref="GeneID:361449"
                     /db_xref="RGD:1311051"
                     /translation="MAVLLETTLGDVVIDLYTEERPRACLNFLKLCKIKYYNYCLIHN
                     VQRDFIIQTGDPTGTGRGGESIFGQLYGDQASFFEAEKVPRIKHKKKGTVSMVNNGSD
                     QHGSQFLITTGENLDYLDGVHTVFGEVTEGMDIVKKINETFVDKDFVPYQDIRINHTV
                     ILDDPFDDPPDLLIPDRSPEPTKEQLDSGRIGADEEIDDFKGRSAEEVEEIKAEKEAK
                     TQAILLEMVGDLPDADIKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWK
                     TGESLCYAFIEFEKEEDCEKAFFKMDNVLIDDRRIHVDFSQSVAKVKWKGKGGKYTKS
                     DFKEYEKEQDKPANLVLKEKVKPKQDAKYDLILDEQAEDSKSSHSHTSKKHKKKTRHC
                     SEEKEDEDYMPIKNPNQDIYREMGFGHYEEEESCWEKQKNEKRDRRQNRSRSRSRERD
                     GHYSNSHKPKYQTDPYERERSRKRDRSRSPKKSKDKEKSKYR"
     exon            139..206
                     /gene="Ppil4"
                     /inference="alignment:Splign:2.1.0"
     exon            207..271
                     /gene="Ppil4"
                     /inference="alignment:Splign:2.1.0"
     exon            272..389
                     /gene="Ppil4"
                     /inference="alignment:Splign:2.1.0"
     exon            390..532
                     /gene="Ppil4"
                     /inference="alignment:Splign:2.1.0"
     exon            533..629
                     /gene="Ppil4"
                     /inference="alignment:Splign:2.1.0"
     exon            630..746
                     /gene="Ppil4"
                     /inference="alignment:Splign:2.1.0"
     exon            747..871
                     /gene="Ppil4"
                     /inference="alignment:Splign:2.1.0"
     exon            872..938
                     /gene="Ppil4"
                     /inference="alignment:Splign:2.1.0"
     exon            939..1050
                     /gene="Ppil4"
                     /inference="alignment:Splign:2.1.0"
     exon            1051..1147
                     /gene="Ppil4"
                     /inference="alignment:Splign:2.1.0"
     exon            1148..1295
                     /gene="Ppil4"
                     /inference="alignment:Splign:2.1.0"
     exon            1296..2946
                     /gene="Ppil4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agacgcgcgc tggctgcgcc tgcgcctgtc attgccgggg tgtttgttcc tgcggagaag
       61 ccggcgccat ggcggttctc ttggagacca ctctgggcga cgtggtcatc gacttgtaca
      121 ccgaagagcg tcctcgtgct tgcttgaatt ttttgaagct gtgcaaaata aaatattaca
      181 actactgcct cattcacaat gtacagcggg attttatcat acaaacagga gatcccacag
      241 ggactggccg tggaggagag tctatatttg ggcaactgta tggtgatcaa gcaagctttt
      301 ttgaggcaga aaaagtacca aggattaagc acaagaagaa aggcactgtg tccatggtga
      361 acaatggcag tgatcaacat ggatctcagt ttcttattac tacaggagaa aatttagatt
      421 accttgatgg tgttcataca gtatttggtg aagtgacaga aggcatggac atagttaaga
      481 aaatcaatga gacctttgtc gacaaggatt ttgtaccata tcaagatatc aggataaatc
      541 atacagtgat tttagatgac ccctttgatg accctcctga tttattaatt cctgatcgat
      601 caccagaacc tacgaaggag caattagata gtggtcgaat aggagcagat gaagaaattg
      661 atgacttcaa aggaagatca gctgaagaag tagaagaaat aaaggcagaa aaagaggcta
      721 aaactcaagc tattctttta gagatggtgg gagacctgcc tgacgcagat attaaacccc
      781 cggagaatgt gctgtttgtg tgtaaactga atccagtgac cacagacgag gacttggaga
      841 tcatattctc aagatttggg ccaataagaa gttgtgaagt tatccgagat tggaaaacag
      901 gagagtccct ctgttatgct tttattgaat ttgaaaagga agaagactgt gagaaagcat
      961 tcttcaagat ggataatgtg cttatagatg acaggagaat ccacgtggat ttcagccagt
     1021 ctgttgcaaa ggttaaatgg aaaggaaaag gtgggaaata taccaagagt gatttcaagg
     1081 agtatgaaaa ggaacaggat aaaccagcca atttggttct aaaagaaaaa gtaaagccca
     1141 agcaagatgc aaaatatgat ctaatactag atgaacaggc agaagactca aaatcaagtc
     1201 actcacacac aagtaaaaaa cacaaaaaga aaacccgtca ctgctctgaa gaaaaagaag
     1261 atgaagatta catgccaatc aaaaatccta atcaggatat ctacagggaa atgggatttg
     1321 gccattatga agaagaagaa agctgttggg agaaacagaa gaatgaaaag agagaccggc
     1381 gtcagaaccg cagtcgtagc cgatctcgag aaagggatgg ccactatagc aacagccaca
     1441 aacccaagta ccagacagat ccttatgaga gggaaaggag cagaaagagg gaccgaagca
     1501 gaagtccaaa gaaatccaaa gataaagaaa aatccaagta cagatgagca gacaggaggc
     1561 agatggaatg tagtaggtct gcccagccag acttggggtg tgcagccgct ctcagttcct
     1621 gcctgcacag ccgactgtgg tctccatgtt agcattgttg cctttcaggg tacactgatg
     1681 gtgtggggct ctggaagaga ggggggcatt ttatgtatac ttttttatac aaattttatt
     1741 gttatgtata catggtaacg ttcatattta acatctttca tagtttcagt cttttaaaaa
     1801 tgaatcgttt catatcacag aagtccgcag acttgtatat aagacataca accttgaaaa
     1861 tggaagtgtt ctgtacccag ctgcagcgtg agagataaga gtatcactca ctagaaaatt
     1921 ccatgtgatc cttctcctgc aggggttttc tgaattgtat ttgccctgct gttaattttg
     1981 tacgtttttg aatttttata caaatggcac aatgtatatt tcctctgtac ttcctttttc
     2041 ttggagtcca ttgattttta tggttacgta gttgtgtgaa tgtgattcag ttgatggact
     2101 tttaggttgt ttgttagttt tcgctgtcta gggaatgcca ctgtgaacat ttcagttggg
     2161 catggcacta tctggcgatt tgttttgtgt tttgatgcat ttatagttat ggctgctcta
     2221 atttacctgg tatgtgaatt tgtatggggg caggggtagc catgagagta tcagtctacc
     2281 atacagctta gagcacattt gctccactat tgtacatatt tttgaccact aatagaaaaa
     2341 gcttaattac atcagaagct agcatctttt ctggggagat ggctcagttg gtacagtgct
     2401 tcttcaccag caaagggctg agttcagatc ttcagcacat acccaagtgt gccagtgcgt
     2461 gtgagtaatc cagcattgcg gggacaggag caggtgcagc tccgggtagt gagagagaga
     2521 gagagagaaa ccctttctca gtgagggcaa ctgagggaga gcttcgcact gacctcatgc
     2581 ctccaaatac tgtccccaca cacacacaca gacacactcg aataaacagc tatcctgcac
     2641 acagaactgt gggtgttgct cacacagatg ttctaaaaca acttcctgaa gaatgagcaa
     2701 gagacaagct gggagcagtg aggagttgcc gactgacagc tgagactccg cttaagagtt
     2761 ctggagtatt gggtgggaga ctgatgcacc aaacatttca aggaaaacat gtccttgatt
     2821 gcaagttgta agaagctctt ttgtttcctt atgtatttaa cagtaatttt atatgcttat
     2881 gggggtgtag tatgtttgat atatgttcat actctgaagc aagtaaatcc atattacaaa
     2941 cagcta
//
