LOCUS       NM_001034188            1325 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus peptidylprolyl isomerase like 1 (Ppil1), mRNA.
ACCESSION   NM_001034188 XM_228046
VERSION     NM_001034188.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1325)
  AUTHORS   Bertram K, Agafonov DE, Liu WT, Dybkov O, Will CL, Hartmuth K,
            Urlaub H, Kastner B, Stark H and Luhrmann R.
  TITLE     Cryo-EM structure of a human spliceosome activated for step 2 of
            splicing
  JOURNAL   Nature 542 (7641), 318-323 (2017)
   PUBMED   28076346
REFERENCE   2  (bases 1 to 1325)
  AUTHORS   Chanarat S and Strasser K.
  TITLE     Splicing and beyond: the many faces of the Prp19 complex
  JOURNAL   Biochim Biophys Acta 1833 (10), 2126-2134 (2013)
   PUBMED   23742842
  REMARK    Review article
REFERENCE   3  (bases 1 to 1325)
  AUTHORS   Davis TL, Walker JR, Campagna-Slater V, Finerty PJ, Paramanathan R,
            Bernstein G, MacKenzie F, Tempel W, Ouyang H, Lee WH, Eisenmesser
            EZ and Dhe-Paganon S.
  TITLE     Structural and biochemical characterization of the human
            cyclophilin family of peptidyl-prolyl isomerases
  JOURNAL   PLoS Biol 8 (7), e1000439 (2010)
   PUBMED   20676357
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1325)
  AUTHORS   Wang X, Zhang S, Zhang J, Huang X, Xu C, Wang W, Liu Z, Wu J and
            Shi Y.
  TITLE     A large intrinsically disordered region in SKIP and its
            disorder-order transition induced by PPIL1 binding revealed by NMR
  JOURNAL   J Biol Chem 285 (7), 4951-4963 (2010)
   PUBMED   20007319
REFERENCE   5  (bases 1 to 1325)
  AUTHORS   Mesa A, Somarelli JA and Herrera RJ.
  TITLE     Spliceosomal immunophilins
  JOURNAL   FEBS Lett 582 (16), 2345-2351 (2008)
   PUBMED   18544344
  REMARK    Review article
REFERENCE   6  (bases 1 to 1325)
  AUTHORS   Xu C, Zhang J, Huang X, Sun J, Xu Y, Tang Y, Wu J, Shi Y, Huang Q
            and Zhang Q.
  TITLE     Solution structure of human peptidyl prolyl isomerase-like protein
            1 and insights into its interaction with SKIP
  JOURNAL   J Biol Chem 281 (23), 15900-15908 (2006)
   PUBMED   16595688
REFERENCE   7  (bases 1 to 1325)
  AUTHORS   Jurica MS, Licklider LJ, Gygi SR, Grigorieff N and Moore MJ.
  TITLE     Purification and characterization of native spliceosomes suitable
            for three-dimensional structural analysis
  JOURNAL   RNA 8 (4), 426-439 (2002)
   PUBMED   11991638
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC099188.1.
            
            On Oct 17, 2005 this sequence version replaced XM_228046.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC099188.1, FQ146686.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132295, SAMEA5760383
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1325
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..1325
                     /gene="Ppil1"
                     /note="peptidylprolyl isomerase like 1"
                     /db_xref="GeneID:309651"
                     /db_xref="RGD:1309119"
     exon            1..235
                     /gene="Ppil1"
                     /inference="alignment:Splign:2.1.0"
     CDS             180..680
                     /gene="Ppil1"
                     /EC_number="5.2.1.8"
                     /note="peptidylprolyl isomerase (cyclophilin)-like 1"
                     /codon_start=1
                     /product="peptidyl-prolyl cis-trans isomerase-like 1"
                     /protein_id="NP_001029360.1"
                     /db_xref="GeneID:309651"
                     /db_xref="RGD:1309119"
                     /translation="MAAIPPDTWQPPNVYLETSMGIIVLELYWKHAPKTCKNFAELAR
                     RGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMAN
                     AGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIL
                     KAYPSG"
     exon            236..390
                     /gene="Ppil1"
                     /inference="alignment:Splign:2.1.0"
     exon            391..459
                     /gene="Ppil1"
                     /inference="alignment:Splign:2.1.0"
     exon            460..1303
                     /gene="Ppil1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acttgcaatc aacccctttc cgagcttcga aagaaggatc ccttgtcatc cttatcccac
       61 agccttaaat cctctcaccc aaaccggctg atcggcggga accggaagtg tgcaccaggg
      121 acgggtccca gtgaactccg ccggaagtag tgattgctag gggattccct tcgctcagca
      181 tggcggcgat ccccccagac acttggcagc cgcccaacgt ctacctggag actagcatgg
      241 gaatcattgt gctggagctg tactggaagc acgctccaaa gacctgcaag aacttcgcgg
      301 agctggctcg gaggggctac tacaacggca ccaagttcca caggatcatc aaggacttca
      361 tgatccaagg cggagacccg acaggcacag gtcgaggtgg cgcctctatt tatggcaaac
      421 agtttgaaga tgagcttcat ccagacctga agttcactgg ggctgggatt cttgcaatgg
      481 ccaatgcagg accagacacc aacggcagcc agttcttcgt gaccttggcc cccacacaat
      541 ggctggacgg caaacatacc atttttggcc gcgtgtgcca gggcataggg atggtgaatc
      601 gagtgggcat ggtggaaaca aactcccagg accggcctgt ggatgacgtg aagatcctga
      661 aggcttaccc ttctgggtag acggagtgct gtctccagtc caccccggtc ctagtgagct
      721 gttgtccgga tgacatgggg ggccgcgtga ctcagcgtca cacataccta ctctgaacca
      781 gaggggttgt ctctggggac atttgtattc cggccgacag ttacagactt gaacagcagg
      841 cgcgttgatg agcgggttaa ctgcgtagcc tccagcgtgc gttctccagg aatgtgaaca
      901 gctctctctc tctgtctcag agcctctgct tctgacactg aacatcccac gcaaagccgc
      961 attgaattgt tgccaaatga aaaatgcatc caacaatcaa gtcgctaaga aggtgtcaag
     1021 tggggaatga taatgtggag tgatcgggat ggttggaagc agaagcgctg gccatttttc
     1081 ctccgggagg gagtgggagt ctagtgagta caaggccagg ccttcagggc ctccccacgg
     1141 gaagtgacac tttttagggc tttagagaaa ataggtaaga ggtttttatg tctttttttt
     1201 ttttaactct ttctggattt gaaggggtag ggtaagaaga aaggtgttaa tgcctatgta
     1261 atacacagaa acttccagaa taaaacatca ttggtagatg aaaaaaaaaa aaaaaaaaaa
     1321 aaaaa
//
