LOCUS       XM_056984638            1249 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus peptidylprolyl isomerase D-like 1
            (Ppidl1), mRNA.
ACCESSION   XM_056984638
VERSION     XM_056984638.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_056984638.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1249
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1249
                     /gene="Ppidl1"
                     /note="peptidylprolyl isomerase D-like 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 ESTs, 28 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:501204"
                     /db_xref="RGD:1560149"
     CDS             51..1163
                     /gene="Ppidl1"
                     /codon_start=1
                     /product="peptidyl-prolyl cis-trans isomerase D"
                     /protein_id="XP_056840618.1"
                     /db_xref="GeneID:501204"
                     /db_xref="RGD:1560149"
                     /translation="MSHPSPAAKPSNSKNPRVFFDVDIGGERVGGIVLELFADIVPKT
                     AENFRALCTGEKGTGLTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEK
                     FEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVAR
                     MLENVEVNGEKPAKLCVIAECGELKEGDDWGIFPKDGSGDSHPDFPEDADIDLKDVDK
                     ILLISEDLKNIGNTFFKSQNWEMAIKKYAKVLRYLDSSRAVIEKADVSRLQPIALSCV
                     LNIGACKLKMSNWQGAIDSCLEALEMDPSNTKALYRKAQGWQGLKEYDQALADLKKAQ
                     EIAPGDKAIQAELLKVKQMIKAQKDKEKAVYAKMFA"
ORIGIN      
        1 ctctcgtaca cgaggcactt gtgtcctgct ttccagcgcc tgccgtgaag atgtcccacc
       61 catccccagc agccaagcct tccaattcca agaacccgcg agtcttcttt gacgtggaca
      121 tcggcgggga gcgagttgga ggaattgttt tagaattgtt tgcagatatt gttcctaaaa
      181 ctgcagaaaa ttttcgtgca ttgtgtacag gagaaaaggg cactggactg acaactggga
      241 aacctctgca ttttaaagga tgccctttcc accgaattat taagaaattt atgattcagg
      301 gtggagactt ctcaaatcag aatgggacag gtggagaaag tatttatggt gaaaaatttg
      361 aagatgagaa ttttcattat aagcatgatc gggagggttt gctgagcatg gcaaatgcag
      421 gccccaatac aaatggttct cagttcttta tcacaacagt tccaactcct catttggatg
      481 ggaaacatgt ggtatttggt caagtaataa aaggactagg tgtggcaagg atgcttgaaa
      541 atgtagaagt gaatggtgaa aaacctgcca aactctgtgt tattgcagaa tgtggagaat
      601 tgaaggaagg ggatgactgg ggaatattcc ccaaagatgg ctctggggat agtcatccag
      661 atttccctga ggatgcagac atagacttaa aggatgtaga taaaatttta ttaatatctg
      721 aagacttaaa aaacattgga aatacttttt tcaagtctca aaactgggag atggctatta
      781 aaaaatatgc aaaggtttta aggtacctgg atagttcaag ggctgttatt gagaaagcag
      841 atgtatccag actgcaaccc atagccttaa gttgtgtgct gaatattggt gcttgtaaat
      901 tgaagatgtc aaattggcag ggggcaattg acagttgctt ggaggctctt gaaatggacc
      961 cttcaaacac taaagcacta taccgaaaag cgcaaggatg gcaaggattg aaagaatatg
     1021 atcaagcatt ggctgatctt aagaaggcgc aggagatagc cccaggagat aaagctatcc
     1081 aggcagaatt gcttaaagtc aaacaaatga taaaggcaca gaaagataaa gagaaggcag
     1141 tgtatgcaaa aatgtttgct taataaggat taaagtttcc ttaactatta tacattgatt
     1201 atataaagga caatgtatat tattgtctac ttaatccctg atgtatttc
//
