LOCUS       XM_006250801             763 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus peptidylprolyl isomerase A
            (cyclophilin A)-like 4D (Ppial4d), mRNA.
ACCESSION   XM_006250801
VERSION     XM_006250801.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006250801.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006250801.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..763
                     /gene="Ppial4d"
                     /note="peptidylprolyl isomerase A (cyclophilin A)-like 4D;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 46 ESTs, 1756 long SRA reads, 53 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments"
                     /db_xref="GeneID:100360977"
                     /db_xref="RGD:2321083"
     CDS             60..554
                     /gene="Ppial4d"
                     /codon_start=1
                     /product="peptidyl-prolyl cis-trans isomerase A"
                     /protein_id="XP_006250863.1"
                     /db_xref="GeneID:100360977"
                     /db_xref="RGD:2321083"
                     /translation="MVNPTVFFDITADGEPLGRVCFELFADKVPKTAENFRALSTGEK
                     GFGYKGSSFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMAN
                     AGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMSIVEAMERFGSRNGKTSKKITISD
                     CGQL"
ORIGIN      
        1 ctaagatcaa aaattggctt tgcagacgcc gctgtctctt ttcgccgctt gctgcagaca
       61 tggtcaaccc caccgtgttc ttcgacatca cggctgatgg cgagcccttg ggtcgcgtct
      121 gcttcgagct gtttgcagac aaagtgccaa agacagcaga aaactttcgt gctctgagca
      181 ctggggagaa aggatttggc tataagggtt cctcctttca cagaattatt ccaggattca
      241 tgtgccaggg tggtgacttc acacgccata atggcactgg tggcaagtcc atctacggag
      301 agaaatttga ggatgagaac ttcatcctga agcatacagg tcctggcatc ttgtccatgg
      361 caaatgctgg accaaacaca aatggttccc agttttttat ctgcactgcc aagactgagt
      421 ggctggatgg caagcatgtg gtctttggga aggtgaaaga aggcatgagc attgtggaag
      481 ccatggagcg ttttgggtcc aggaatggca agaccagcaa gaagatcacc atctccgact
      541 gtggacaact ctaatttctt tgacttgcgg gcattttacc catcaaacca ttccttctgt
      601 agctcaggag agcaccccca ccccatctgc tcgcaatacc ctgtaatctc tgctctcact
      661 gaagttcttt gggttccata ttttcctcat tccccttcaa gtctagcagg attgcaaagt
      721 taagtttatg attatgaata aaaactaaat gagaaaaaaa aaa
//
