LOCUS       NM_001100582            3389 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus PPFIA binding protein 2 (Ppfibp2), mRNA.
ACCESSION   NM_001100582 XM_001072388 XM_001072553 XM_219201
VERSION     NM_001100582.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3389)
  AUTHORS   Boyken,J., Gronborg,M., Riedel,D., Urlaub,H., Jahn,R. and Chua,J.J.
  TITLE     Molecular profiling of synaptic vesicle docking sites reveals novel
            proteins but few differences between glutamatergic and GABAergic
            synapses
  JOURNAL   Neuron 78 (2), 285-297 (2013)
   PUBMED   23622064
REFERENCE   2  (bases 1 to 3389)
  AUTHORS   Bohm,D., Keller,K., Pieter,J., Boehm,N., Wolters,D., Siggelkow,W.,
            Lebrecht,A., Schmidt,M., Kolbl,H., Pfeiffer,N. and Grus,F.H.
  TITLE     Comparison of tear protein levels in breast cancer patients and
            healthy controls using a de novo proteomic approach
  JOURNAL   Oncol Rep 28 (2), 429-438 (2012)
   PUBMED   22664934
REFERENCE   3  (bases 1 to 3389)
  AUTHORS   Stafford,R.L., Tang,M.Y., Sawaya,M.R., Phillips,M.L. and Bowie,J.U.
  TITLE     Crystal structure of the central coiled-coil domain from human
            liprin-beta2
  JOURNAL   Biochemistry 50 (18), 3807-3815 (2011)
   PUBMED   21462929
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On or before Nov 23, 2008 this sequence version replaced
            XM_219201.4, XM_001072553.1, XM_001072388.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.836709.1,
                                           SRR26360194.1165969.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-213               JAXUCZ010000001.1  170916649-170916861
            214-313             JAXUCZ010000001.1  170957783-170957882
            314-528             JAXUCZ010000001.1  170972117-170972331
            529-621             JAXUCZ010000001.1  171001221-171001313
            622-735             JAXUCZ010000001.1  171005339-171005452
            736-867             JAXUCZ010000001.1  171016865-171016996
            868-960             JAXUCZ010000001.1  171028040-171028132
            961-1072            JAXUCZ010000001.1  171035480-171035591
            1073-1134           JAXUCZ010000001.1  171037269-171037330
            1135-1210           JAXUCZ010000001.1  171038334-171038409
            1211-1314           JAXUCZ010000001.1  171039839-171039942
            1315-1382           JAXUCZ010000001.1  171041812-171041879
            1383-1440           JAXUCZ010000001.1  171042583-171042640
            1441-1482           JAXUCZ010000001.1  171043380-171043421
            1483-1624           JAXUCZ010000001.1  171047783-171047924
            1625-1766           JAXUCZ010000001.1  171049002-171049143
            1767-1895           JAXUCZ010000001.1  171049706-171049834
            1896-2046           JAXUCZ010000001.1  171056147-171056297
            2047-2158           JAXUCZ010000001.1  171056578-171056689
            2159-2247           JAXUCZ010000001.1  171056887-171056975
            2248-2370           JAXUCZ010000001.1  171057600-171057722
            2371-2496           JAXUCZ010000001.1  171058893-171059018
            2497-2685           JAXUCZ010000001.1  171060138-171060326
            2686-3389           JAXUCZ010000001.1  171061393-171062096
FEATURES             Location/Qualifiers
     source          1..3389
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q33"
     gene            1..3389
                     /gene="Ppfibp2"
                     /note="PPFIA binding protein 2"
                     /db_xref="GeneID:308918"
                     /db_xref="RGD:1565383"
     exon            1..213
                     /gene="Ppfibp2"
                     /inference="alignment:Splign:2.1.0"
     exon            214..313
                     /gene="Ppfibp2"
                     /inference="alignment:Splign:2.1.0"
     CDS             250..2880
                     /gene="Ppfibp2"
                     /note="liprin beta 2; protein tyrosine phosphatase,
                     receptor-type, F interacting protein, binding protein 2;
                     PTPRF interacting protein, binding protein 2 (liprin beta
                     2)"
                     /codon_start=1
                     /product="liprin-beta-2"
                     /protein_id="NP_001094052.1"
                     /db_xref="GeneID:308918"
                     /db_xref="RGD:1565383"
                     /translation="MTSDASHMLEAALEQMDGIIAGTKTAADFSDGTCEPGLSPPSSC
                     LNSMPVLHLIEDLRLALEMLALPQEREALLSQIPGPTAAYIKEWFEDSLSQVNHHSAA
                     SNETYQERLARLEGDKESLILQVSVLTDQVEAQGEKIRDLEVCLEGHQVKLNAAEEML
                     QQELLSRTSLETQKLDLMTEVSELKLKLVGMEKEQKEQEEKQRKAEELLQELKHLKIK
                     VEELENERNQYEWELKATKAEVAQLQEQVALKDAEIERLHSQLSRSSALHSDHAERDQ
                     EIHRLKMGMETLRVANEDKDRRIEELTGLLNQYLRVKEIVMATQGSSERTLSINEDEI
                     EGSFRKWNTTSKSPEEVMKQEVSPRCSSPTPGPPPLPQKSLETRAQKKLSCSLEDLRC
                     ESGNKCINGNQTSPVGEPKDSSFLAEQKYPTLPGKLSGATPNGEAAKSPPTASLQPDS
                     SGSSQPKLRDTEGGWEDIVMTNELSSTSSGTESSPQSPLTPDGKRSPKGIKKFWGKIR
                     RTQSGNFNTDTPGMVEFRRGGLRATAGPRLSRTRDTKGQKCDANAPFAQWSTERVCTW
                     LQDFGLAQYVIFARQWVASGHTLLTATPQDMEKELGIKHPLHRKKLVLAVKAINTKQE
                     EKSALLDHVWVTRWLDDIGLPQYKDQFYESRVDGRMLQYLTVNDLLFLKVTSQLHHLS
                     IKCAIHVLHVNKFNPNCLHRRPADESNLSPSEVVQWSNHRVMEWLRSVDLAEYAPNLR
                     GSGVHGGLIILEPRFTGDTLAMLLNIPPQKTLLRRHLTTKFNALIGPEAEQEKRDKMA
                     SPAYTPLTTTAKVRPRKLGFSHFGNMRKKKFDESTDYICPMEPGDAVSDSHRVYGVYR
                     GLSPLDNHELDGLDQVGQIS"
     exon            314..528
                     /gene="Ppfibp2"
                     /inference="alignment:Splign:2.1.0"
     exon            529..621
                     /gene="Ppfibp2"
                     /inference="alignment:Splign:2.1.0"
     exon            622..735
                     /gene="Ppfibp2"
                     /inference="alignment:Splign:2.1.0"
     exon            736..867
                     /gene="Ppfibp2"
                     /inference="alignment:Splign:2.1.0"
     exon            868..960
                     /gene="Ppfibp2"
                     /inference="alignment:Splign:2.1.0"
     exon            961..1072
                     /gene="Ppfibp2"
                     /inference="alignment:Splign:2.1.0"
     exon            1073..1134
                     /gene="Ppfibp2"
                     /inference="alignment:Splign:2.1.0"
     exon            1135..1210
                     /gene="Ppfibp2"
                     /inference="alignment:Splign:2.1.0"
     exon            1211..1314
                     /gene="Ppfibp2"
                     /inference="alignment:Splign:2.1.0"
     exon            1315..1382
                     /gene="Ppfibp2"
                     /inference="alignment:Splign:2.1.0"
     exon            1383..1440
                     /gene="Ppfibp2"
                     /inference="alignment:Splign:2.1.0"
     exon            1441..1482
                     /gene="Ppfibp2"
                     /inference="alignment:Splign:2.1.0"
     exon            1483..1624
                     /gene="Ppfibp2"
                     /inference="alignment:Splign:2.1.0"
     exon            1625..1766
                     /gene="Ppfibp2"
                     /inference="alignment:Splign:2.1.0"
     exon            1767..1895
                     /gene="Ppfibp2"
                     /inference="alignment:Splign:2.1.0"
     exon            1896..2046
                     /gene="Ppfibp2"
                     /inference="alignment:Splign:2.1.0"
     exon            2047..2158
                     /gene="Ppfibp2"
                     /inference="alignment:Splign:2.1.0"
     exon            2159..2247
                     /gene="Ppfibp2"
                     /inference="alignment:Splign:2.1.0"
     exon            2248..2370
                     /gene="Ppfibp2"
                     /inference="alignment:Splign:2.1.0"
     exon            2371..2496
                     /gene="Ppfibp2"
                     /inference="alignment:Splign:2.1.0"
     exon            2497..2685
                     /gene="Ppfibp2"
                     /inference="alignment:Splign:2.1.0"
     exon            2686..3389
                     /gene="Ppfibp2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cactcccgga cgagcctctc tggggtcccc gcccccgtca cgtgggtgcc ggacccggtt
       61 ggtgctggcg ggtcagccac ttagttggca gttggttctt gggccggtgg cctgtcactt
      121 ggttctcggc tcttatgttg gaaagagtaa ggggcacacc ggagcgacct gcatacctga
      181 gcctccgaga gagaagctgc gctcttcctc cagtagcagc aggaggagac taagcagata
      241 aaaggcgcca tgacttctga cgcgagtcat atgctggaag ctgccttgga gcagatggat
      301 gggatcattg caggcactaa aacggctgca gattttagtg atggtacctg tgagcctggg
      361 ctgtctcctc catcctcctg cttgaactcc atgcctgtgc tccatctcat cgaggacctg
      421 agactggcct tggagatgtt ggcacttcct caggaaaggg aagccctcct cagccagatc
      481 cctggcccaa cagctgccta cataaaggag tggtttgagg acagcttgtc ccaggtaaat
      541 caccacagtg ctgctagtaa tgaaacctac caggaacgcc tggcacggct agaaggagat
      601 aaagagtccc tcatattgca ggtgagcgtc ctcacagatc aagtggaagc ccaaggagag
      661 aagattcggg accttgaagt gtgtctggaa ggtcaccagg tgaaactcaa tgccgcggaa
      721 gagatgcttc agcaggagct gctaagtcgc acatctctgg agacccagaa gttggatctg
      781 atgactgagg tgtctgagct gaagctcaag ctggttggta tggagaaaga acagaaagaa
      841 caggaggaaa aacaaagaaa agcagaggag ttactgcaag agctcaaaca cctaaaaatc
      901 aaagtggagg agctggagaa cgaacggaac cagtatgagt gggagctgaa agccactaag
      961 gccgaggtag cccagctgca agaacaggtg gccctaaaag atgcagaaat cgagcgtctt
     1021 cacagccaac tctctcggag ttcagctctc cacagcgacc atgcagaacg agatcaagaa
     1081 atccaccgac tgaaaatggg aatggaaaca ctgcgggttg ccaatgagga taaggaccgt
     1141 cggatagagg agctgacagg gctgttgaac cagtacctaa gggtaaagga gattgtgatg
     1201 gcaactcagg ggtcttcaga gagaaccctc tcaatcaatg aagatgaaat agagggaagc
     1261 ttccggaaat ggaacactac aagtaaaagc ccagaggaag taatgaaaca agaggtatcg
     1321 ccacgatgca gctctcccac cccagggcca cctccattgc cacagaaatc attggagacc
     1381 agggctcaga agaaactctc ctgtagtctg gaagacttga gatgtgaatc tgggaataag
     1441 tgtatcaatg ggaaccagac atccccggtg ggagagccca aggacagctc tttcctagca
     1501 gagcagaaat accccacgtt acctgggaag ctctcaggag ccacacccaa tggagaagct
     1561 gccaaatctc ctcctactgc ctccctccag cctgactctt cagggagcag ccagccaaag
     1621 ctgagagaca cagaaggtgg ttgggaagat atcgtcatga ccaatgaact ctcatctact
     1681 tcatctggta ctgagtcaag cccccagtct cccctgacac cagatggcaa acggagcccc
     1741 aaaggcatta agaaattctg gggaaaaatc cgaagaactc agtcaggaaa cttcaacact
     1801 gatacaccgg gtatggtgga gtttcgacga ggtggtctcc gggcaactgc agggccaaga
     1861 ctttctagga ccagggacac caagggacag aaatgtgatg ccaatgcccc ctttgcccaa
     1921 tggagcacag aacgtgtatg tacatggctg caggattttg gcctggctca gtacgtgatc
     1981 tttgctagac agtgggtggc atctggccac acactactga cagctacccc tcaggacatg
     2041 gaaaaggagc tagggattaa acacccactc cataggaaga agctggtttt agcagtgaaa
     2101 gctatcaaca ccaagcaaga agaaaagtct gcgctgcttg accacgtttg ggtgacacgg
     2161 tggcttgatg atattggctt accccaatac aaagaccagt tttatgaatc aagagttgat
     2221 gggcgaatgc tgcaatacct aactgtgaat gatctactct tcttaaaagt cactagccaa
     2281 ctacatcatc tcagcatcaa atgtgctatt catgtgctac atgtcaacaa gttcaacccc
     2341 aactgcctgc acaggagacc tgctgatgag agtaaccttt ctccttcaga agtcgtgcag
     2401 tggtccaacc acagggtaat ggagtggctg cgatccgtgg acctggcaga gtatgcaccc
     2461 aaccttcgag ggagtggcgt ccacggtggc ctcattatcc tggagcctcg ttttactggg
     2521 gacaccctgg ctatgcttct taacatcccc ccacagaaga cgctcctcag gcgccatctg
     2581 accaccaaat tcaatgccct gattggtcct gaggctgaac aggaaaagcg agataaaatg
     2641 gcctcaccag cttacacacc gctgaccacc acagccaaag ttcggcctag gaaactcgga
     2701 ttttcacatt ttggaaacat gagaaaaaag aagtttgatg aatcaacgga ttacatttgc
     2761 cccatggagc ctggagatgc tgtcagtgac agccacaggg tctacggtgt ctaccggggc
     2821 ctcagtcccc ttgataacca tgaactagat ggtctggacc aggtgggaca gataagctga
     2881 cgcccctgtc atctgccttc tctgtgcaag gagagctcac agtaacaccg cgtgtcacca
     2941 tataactgca cttcaccctc gtccttgtgc atgacctgca aaaaaacaac tgtgtgtctt
     3001 tgggctggtt tccctacaca ccttaacgat ggtcaggata tgcagttaca cagccacaaa
     3061 ggggacagac tttggggact ctagccaaat gtggactcag gggaaattac ctggagacat
     3121 tgtatatatt tagtaattca taatatccgt atttcagctg gaaacacatg agcagaggca
     3181 ggccctggcc agtctcaaag gctcagttct cagacactgc ccctatactt ctgtcgaagg
     3241 aagaattcaa gtgccttagg cctgtgagcc acaaagtctt ggctgagatc aaagtgggta
     3301 tttaggccat agtgacaatg taatttgatt gtaccttact atagggtggc cacttctttc
     3361 tgataataaa aacagtattt atatagaaa
//
