LOCUS       XM_017594921            5249 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus PTPRF interacting protein alpha 2
            (Ppfia2), transcript variant X16, mRNA.
ACCESSION   XM_017594921
VERSION     XM_017594921.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017594921.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017594921.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5249
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5249
                     /gene="Ppfia2"
                     /note="PTPRF interacting protein alpha 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 43 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:362876"
                     /db_xref="RGD:1305021"
     CDS             1..3771
                     /gene="Ppfia2"
                     /codon_start=1
                     /product="liprin-alpha-2 isoform X16"
                     /protein_id="XP_017450410.1"
                     /db_xref="GeneID:362876"
                     /db_xref="RGD:1305021"
                     /translation="MMCEVMPTINEDTPMSQRGSQSSGSDSDSHFEQLMVNMLDERDR
                     LLDTLRETQESLSLAQQRLQDVIYDRDSLQRQLNSALPQDIESLTGGLTGSKGADPPE
                     FAALTKELNACREQLLEKEEEISELKAERNNTRLLLEHLECLVSRHERSLRMTVVKRQ
                     AQSPSGVSSEVEVLKALKSLFEHHKALDEKVRERLRVSLERVSALEEELAAANQEIVA
                     LREQNVHIQRKMVSSEGSTESEHLDGMEPGQKVHEKRLSNGSIDSTDDTSQIVELQEL
                     LEKQNYEMAQMKDRLAALSSRVGEVEQEAETARKDLIKTEEMNTKYQRDIREAMAQKE
                     DMEERITTLEKRYLSAQRESTSIHDMNDKLENELANKEAILRQMEEKNRQLQERLELA
                     EQKLQQTMRKAETLPEVEAELAQRIAALTKAEERHGNIEERMRHLEGQLEEKNQELQR
                     ARQREKMNEEHNKRLSDTVDRLLTESNERLQLHLKERMAALEEKNVLIQESETFRKNL
                     EESLHDKERLAEEIEKLRSELDQMKMRTGSLIEPTISRTHLDTSAELRYSVGSLVDSQ
                     SDYRTTKVIRRPRRGRMGVRRDEPKVKSLGDHEWNRTQQIGVLGSHPFESDTEMSDID
                     DDDRETIFSSMDLLSPSGHSDAQTLAMMLQEQLDAINKEIRLIQEEKESTELRAEEIE
                     NRVASVSLEGLNLARVHPGTSITASVTASSLASSSPPSGHSTPKLTPRSPAREMDRMG
                     VMTLPSDLRKHRRKIAVVEEDGREDKATIKCETSPPPTPRAIRMTHTLPSSYHNEARS
                     LSASLEPDRLGLGSANSSQDSLHKAPKKKGIKSSIGRLFGKKEKARLGQLRGFMETEA
                     AAQESLGLGKLGTQAEKDRRLKKKHELLEEARRKGLPFAQWDGPTVVAWLELWLGMPA
                     WYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLKLRLAIQEMVSLTSPSAPPTS
                     RTPSGNVWVTHEEMENLAAPAKTKESEEGSWAQCPVFLQTLAYGDMNHEWIGNEWLPS
                     LGLPQYRSYFMECLVDARMLDHLTKKDLRVHLKMVDSFHRTSLQYGIMCLKRLNYDRK
                     ELERRREASQHEIKDVLVWSNDRVIRWIQAIGLREYANNILESGVHGSLIALDENFDY
                     SSLALLLQIPTQNTQARQILEREYNNLLALGTERRLDESDDKNFRRGSTWRRQFPPRE
                     VHGISMMPGSSETLPAGFRLTTTSGQSRKMTTDVASSRLQRLDNSTVRTYSC"
ORIGIN      
        1 atgatgtgcg aagtgatgcc cacgattaat gaggacaccc caatgagcca acgggggtcc
       61 caaagtagtg gctctgactc ggactcccac tttgagcaac tgatggtcaa tatgctagat
      121 gaaagggacc gtttactgga cacacttcga gagactcagg aaagcctctc gcttgcccag
      181 caaagactcc aggatgtcat ctacgaccga gattcactcc agagacagct taattcagcc
      241 ctgcctcagg acatcgaatc tctaacagga gggctgactg gttctaaggg ggctgatcca
      301 ccggagtttg ctgcactgac taaagagctg aatgcttgcc gtgagcaact tctagaaaag
      361 gaagaagaga tttcagagct aaaagctgaa agaaacaaca caagactgtt gctggaacac
      421 ttggagtgcc ttgtgtcccg acatgaaagg tcactaagaa tgacagtggt caagcggcaa
      481 gcacagtctc cctctggagt gtccagtgaa gtggaggttc tcaaggcact gaaatctttg
      541 tttgagcacc acaaagcctt ggatgaaaag gtaagggagc gactgagggt ttctttagaa
      601 agagtctctg cactggaaga ggaactagct gcagctaatc aggagattgt tgccttgcgt
      661 gagcaaaatg ttcatattca aagaaaaatg gtatcgagtg aggggtccac ggagtcagaa
      721 catcttgacg ggatggaacc aggccagaaa gtccatgaaa agcgtctatc caatggctcc
      781 atagattcca cagatgacac cagccagatc gtcgagctgc aagaattgct tgaaaagcaa
      841 aactatgaaa tggcccaaat gaaagaccgc ttagcagctc tttcttcccg agtgggagaa
      901 gtggaacaag aagccgagac ggcaagaaag gacctcatta aaacagaaga aatgaacacc
      961 aaatatcaaa gggacatccg agaggccatg gctcagaagg aagatatgga agaaagaatc
     1021 acaactctgg agaagcgtta cctgagtgcc cagagagaat ctacctccat tcacgacatg
     1081 aatgataaac tagaaaatga gttggcaaac aaggaagcca tcttgcggca gatggaagag
     1141 aaaaacaggc aattgcaaga gcgtcttgag ctggctgagc aaaagttaca gcagaccatg
     1201 aggaaagctg aaactttacc tgaagtagag gcagaacttg ctcagagaat tgcagcccta
     1261 acaaaggctg aagagagaca tggaaatatt gaagagcgta tgagacacct agagggtcaa
     1321 cttgaagaga agaatcaaga acttcaaaga gctaggcaaa gggagaaaat gaatgaagag
     1381 cataacaaga gattatctga caccgtggac aggcttctga cagaatccaa tgagcgcctg
     1441 cagctgcacc taaaggaaag gatggctgcc ttggaagaga agaatgtttt gattcaagaa
     1501 tcagaaacct tcagaaaaaa tcttgaagag tccttacatg ataaggaaag actagcagaa
     1561 gaaatagaga agttgaggtc tgaacttgac caaatgaaaa tgagaactgg ctctctaatt
     1621 gaaccaacta tatcgagaac tcatctagac acctccgctg agttgcggta ttcagttggg
     1681 tccctcgtag acagccagtc tgattacaga accactaaag taatacgaag accaaggaga
     1741 ggccgcatgg gtgtgcgaag agatgagcca aaggtgaaat cccttgggga tcatgaatgg
     1801 aacaggactc agcaaattgg agtactaggc agtcacccat tcgaaagtga cactgaaatg
     1861 tcagatattg atgatgacga cagagaaacg attttcagct caatggatct tctctctcca
     1921 agtggccatt ctgatgccca gacgctagct atgatgcttc aagaacaact ggatgcaatc
     1981 aacaaagaaa taaggctaat ccaggaagaa aaggaatcta cagaattgcg tgctgaagaa
     2041 atcgagaata gggtggctag tgtaagcttg gaaggtctga acttggcaag ggtccatcct
     2101 ggtacctcca tcactgcttc tgttacagct tcatcactgg ccagttcatc tcccccaagt
     2161 ggacactcaa cgccaaagct tacaccaaga agcccggcca gggaaatgga ccgtatggga
     2221 gtcatgaccc tgccaagtga tctaaggaaa catcggagaa agattgcagt ggtggaagaa
     2281 gatgggcggg aagataaagc aacaattaaa tgtgaaactt ctcctccccc aacacccaga
     2341 gccatcagaa tgactcacac cctaccttct tcctaccaca atgaggcccg gagtttatct
     2401 gcctctcttg agccagatag acttgggctt ggcagtgcca atagcagcca ggactctctt
     2461 cacaaagccc cgaagaagaa aggaatcaag tcttcaattg ggcgtttgtt tggtaaaaaa
     2521 gagaaggctc gacttgggca gcttcgaggc ttcatggaga cagaagctgc agcacaggaa
     2581 tcgctgggct taggcaaact tggcactcaa gctgaaaagg acagaaggct gaagaaaaag
     2641 catgaacttc ttgaagaagc tcgtagaaaa ggattaccct ttgcccagtg ggacggacct
     2701 actgtggttg cgtggctgga gctctggctg ggaatgcctg cttggtatgt ggcagcatgc
     2761 agagccaacg tgaaaagtgg tgccatcatg tcggctttat cagacactga aatccaaagg
     2821 gagattggaa tcagcaaccc tctgcaccgc ttaaagctca gactagccat ccaggagatg
     2881 gtttccctca caagcccttc agctcctccg acatcgcgaa ctccttcagg caatgtctgg
     2941 gtgacccatg aagaaatgga aaacctcgca gctccagcaa aaacgaaaga atctgaggaa
     3001 ggaagctggg cccagtgtcc ggtttttcta cagaccctgg cttatggaga tatgaaccat
     3061 gagtggatcg ggaacgaatg gcttcccagc ctcggattac cgcaataccg aagttacttt
     3121 atggaatgct tggttgatgc aagaatgtta gatcacctca caaaaaagga tcttcgtgtc
     3181 catttaaaaa tggtggatag tttccatcga acaagtttac agtatgggat tatgtgcttg
     3241 aaaagattga attatgatag gaaagagcta gagagaagac gagaagcaag tcaacatgaa
     3301 ataaaagatg ttttagtgtg gagcaatgat cgagttattc gctggatcca agcgattgga
     3361 cttcgggaat atgccaataa cattcttgag agtggagtgc atggctcact catagccctg
     3421 gatgagaact ttgactacag cagcctagct ctactgctgc agattcccac gcagaacacc
     3481 caggcaaggc agattcttga acgcgagtat aataacctct tggctctggg aactgagcgg
     3541 cgactggatg aaagtgatga caagaatttc agacgcggat caacctggcg aaggcagttc
     3601 cctcctcgcg aggtacacgg aatcagcatg atgcctggat cctcagaaac attaccagct
     3661 ggattcaggt tgaccacaac atctgggcag tccagaaaaa tgacgacaga tgttgcttca
     3721 tcaagactgc agaggttaga caactccact gttcgcacat actcatgttg acaagtcact
     3781 caaaggaggc agcactgacc tgctatgtcg tcttttctgt ctacacgacc taaagtgcac
     3841 tactgcctaa gaagacaaat ggagaagtct ttgtgaagac tgaactctaa aggaataata
     3901 taagtaacga tttaccaaac gttaaatatg tgactctggg gggagttggg tcttgggttt
     3961 gattagttta ctatgattgt aataaaatgt ttaagtcatc tgatgtaaga gcatcatcca
     4021 cgtcataaat tctgaacatc tgatgctttt atgagatgga accactcgtt tttttcatgt
     4081 tgtaatataa taggcattta tgtattactg tgtatcattt ctttttaaag gtgtaagtct
     4141 tctgtaaatg gatataaata tgattttttt aaaaaaataa aatatatggt tcatggagtc
     4201 tcgagtgcaa acattgaaca attccaagta ctgtttgtat tttaccattt caccatttat
     4261 acggtttttg aactgtaaca gtcaatcaat atgtttctta gaagtgtgtt tcatgcttcg
     4321 acatgcttct ccttcaagtc tgtcatactt taaagctgaa cacctgcctc tgatcatgtg
     4381 atttaacctg gagcccaaaa tgacctttaa aggcaatcag ggatgtgata ccctctctct
     4441 ctctctctct ttacaaatgc actgtgatgg ctcaatctgt tttaaaagaa aacaaagcca
     4501 aactgtttac aagagtcaaa tgcaatgatt ttaaaaattt atattaagaa aaccattacc
     4561 taatcgtgtt gcctgtggac caagaaacac acacacacac acacacacac acacacacac
     4621 acacacacac acacatttta ttaagaacta cacgttcata gaaacaccct gaacttccag
     4681 ccagcactgg acagtgaatg tcaatcattg tagagtctga ggtccatttc cactaggggt
     4741 ggggtggagg ggcagaaccc cataacccac ccctttttaa aatcactgtt aacagggcat
     4801 tagccagact caagtctgat atcacaagcc tttagctgaa ctaaccattt tttgtgactt
     4861 ccctgaattc cctttcatca gaggaaataa agacagaatg gattaacatt aacatatata
     4921 gtgtataaaa acgtaaagat gagtaatctt tttcttgtgg ctttttttgg tggtgtcact
     4981 gttgtttatt ctttattgat atgggagatt tcaaagtgaa acctatttaa taataccatt
     5041 gactaactgc tgttttcctg ctgcttggtc ttattaaatg caagacctgt cattagtaaa
     5101 ttatattttt tttgtatttt aattcgttat atttgcacgt acatttgttt caatgtctat
     5161 ttttgttgaa cagattcaat caaaaggtaa tggtaacaga aaccctctcc attgtcaata
     5221 aaaaaaaatg cttccagttt tctgcttaa
//
