LOCUS       NM_001034935            2497 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus protein phosphatase with EF-hand domain 1
            (Ppef1), mRNA.
ACCESSION   NM_001034935 XM_228959
VERSION     NM_001034935.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2497)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC104696.1.
            
            [WARNING] On Oct 24, 2024 this sequence was replaced by
            NM_001034935.2.
            
            On Oct 21, 2005 this sequence version replaced XM_228959.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC104696.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2497
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq14"
     gene            1..2497
                     /gene="Ppef1"
                     /note="protein phosphatase with EF-hand domain 1"
                     /db_xref="GeneID:317498"
                     /db_xref="RGD:1562772"
     exon            1..26
                     /gene="Ppef1"
                     /inference="alignment:Splign:2.1.0"
     exon            27..187
                     /gene="Ppef1"
                     /inference="alignment:Splign:2.1.0"
     CDS             142..2064
                     /gene="Ppef1"
                     /EC_number="3.1.3.16"
                     /note="PPEF-1; protein phosphatase with EF hand
                     calcium-binding domain 1; protein phosphatase, EF-hand
                     calcium binding domain 1; serine/threonine-protein
                     phosphatase with EF-hands 1-like"
                     /codon_start=1
                     /product="serine/threonine-protein phosphatase with
                     EF-hands 1"
                     /protein_id="NP_001030107.1"
                     /db_xref="GeneID:317498"
                     /db_xref="RGD:1562772"
                     /translation="MGCGSSSKKGKKSEKVVRAALIIQNWYRRYRARLSARQHYALAI
                     FQSIEYADEQGQMQLSSFFSFMLENYTNTHKEDSALVSRLFENTRLESKDREEYVGLI
                     DVPDSYDGPRLQFPLTFTDINLLLQAFKQQQTLHAHYVLEVLFEARKILKQMPNFTRI
                     QTFPAKEITICGDLHGKLDDLMLIFYKNGLPSEKNPYVFNGDFVDRGNNSMEILMILL
                     VSFLVYPTDLHLNRGNHEDFMMNLRYGFTKEILQKYKLHGKKILQVLEELYTWLPIGT
                     IIDNEILVIHGGISESTDLNILQQLQRNKMKSVLMPPMSTNQECNIKKNKAGPSEQSA
                     SEQLTKLEWEQIIDLLWSDPRGKKGCYPNTSRGGGCYFGPDVTSKVLNKNQLKMVIRS
                     HECKPDGYEICHDGKVITVFSASNYYEEGSNRGAYIRLSYGTSPQFFQYQVTSTSCLN
                     PLYQRVNAMEFSAFRILKERMIARKTDLINAFELRDHSRTGKISLAQWAFSMESILGL
                     NLPWRSLSSHLVSTDSSGSVDYMSSFDDIHIEKPMKDMKSDLIETMYRYRSDLKIIFN
                     IIDTDQSGLISMDEFRTMWKLFNAHYKVHIDDSQIDELASTMDSNKDGNIDFNEFLRA
                     FYVVHKYETPESPLNK"
     exon            188..315
                     /gene="Ppef1"
                     /inference="alignment:Splign:2.1.0"
     exon            316..376
                     /gene="Ppef1"
                     /inference="alignment:Splign:2.1.0"
     exon            377..540
                     /gene="Ppef1"
                     /inference="alignment:Splign:2.1.0"
     exon            541..655
                     /gene="Ppef1"
                     /inference="alignment:Splign:2.1.0"
     exon            656..702
                     /gene="Ppef1"
                     /inference="alignment:Splign:2.1.0"
     exon            703..869
                     /gene="Ppef1"
                     /inference="alignment:Splign:2.1.0"
     exon            870..906
                     /gene="Ppef1"
                     /inference="alignment:Splign:2.1.0"
     exon            907..1056
                     /gene="Ppef1"
                     /inference="alignment:Splign:2.1.0"
     exon            1057..1176
                     /gene="Ppef1"
                     /inference="alignment:Splign:2.1.0"
     exon            1177..1362
                     /gene="Ppef1"
                     /inference="alignment:Splign:2.1.0"
     exon            1363..1505
                     /gene="Ppef1"
                     /inference="alignment:Splign:2.1.0"
     exon            1506..1612
                     /gene="Ppef1"
                     /inference="alignment:Splign:2.1.0"
     exon            1613..1776
                     /gene="Ppef1"
                     /inference="alignment:Splign:2.1.0"
     exon            1777..1861
                     /gene="Ppef1"
                     /inference="alignment:Splign:2.1.0"
     exon            1862..2474
                     /gene="Ppef1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctgcactggc cgagcagaag gcacagtatc tatggactga agggaatcgg ttgagtggct
       61 tcttgaagca caaagggagg gaattcacac tctcactgag aaccagaagt tgaatttgtc
      121 agcatatatg ctttagaagc catgggctgt ggcagttctt caaaaaaagg caagaaatct
      181 gagaaagtgg tgagagctgc attaatcatc caaaattggt accgacggta cagagctcga
      241 ctgagcgcca gacaacatta tgccctcgcc atcttccagt ctatcgaata tgctgacgag
      301 caaggccaga tgcagctatc cagcttcttt tctttcatgt tggaaaacta tacaaacaca
      361 cacaaggaag attcagcatt agtaagtcga ctttttgaaa acaccaggct cgaaagcaag
      421 gacagagagg aatacgtggg attgatagat gtgcctgact cctatgacgg tcctcgtctg
      481 cagtttcctc tcacgtttac tgacatcaat ttacttcttc aggccttcaa gcaacagcag
      541 acacttcatg ctcactatgt cttagaggtg ctatttgaag ccaggaaaat cctgaagcag
      601 atgccgaatt tcactcgcat acaaaccttt cccgccaaag aaataacaat ctgtggtgat
      661 ttgcatggga aactggatga tcttatgtta attttctata agaatggcct gccttcagag
      721 aagaatccat atgtgtttaa tggtgatttt gtagatcgag gaaacaattc catggagatc
      781 ctaatgatcc tgcttgttag ttttcttgtc taccccactg acctgcacct caatagaggg
      841 aaccatgaag actttatgat gaacctgagg tatggcttca caaaagaaat cttacagaaa
      901 tacaagctac atgggaaaaa aatcttacaa gtcttggaag aactctatac ctggctccca
      961 attggtacaa ttattgacaa tgaaatcctg gtcatacatg gtgggatatc agaatccacg
     1021 gacttgaata tactccagca actacagaga aataaaatga agtctgtgtt aatgccacca
     1081 atgtcaacaa atcaggaatg taacataaag aaaaataaag cagggccgag cgaacagtct
     1141 gcttctgaac agttgacaaa gctggaatgg gaacagatta ttgaccttct gtggagtgac
     1201 cccagaggca aaaaaggctg ttatccaaac acaagccgag gaggcggctg ctattttgga
     1261 ccagatgtta cctctaaggt tcttaataaa aaccagttga agatggtcat tcggtctcat
     1321 gagtgtaaac ctgatgggta tgaaatctgt catgatggaa aggtcattac tgtattttct
     1381 gcttctaatt attatgaaga aggcagcaac cgaggagctt acatcagact aagttatggt
     1441 acatctccac aatttttcca gtaccaagtg actagtacat catgcctgaa ccctctttac
     1501 caaagggtga atgctatgga attcagtgcc ttcaggatac taaaggaaag aatgattgca
     1561 agaaaaactg accttatcaa tgcttttgag ctccgagatc acagtaggac aggaaagatt
     1621 tcattggccc agtgggcttt ttctatggag agcattttgg ggctgaactt accgtggaga
     1681 tctctgagtt cgcatctggt aagcactgac tccagcggaa gcgtcgacta catgtccagc
     1741 tttgatgaca tccacattga gaagccgatg aaagatatga agtctgatct cattgaaact
     1801 atgtacagat accgatctga cctgaaaatc atatttaata tcatcgacac cgatcagtca
     1861 ggtctgatct ccatggatga attccggacc atgtggaaac ttttcaatgc tcattacaaa
     1921 gttcatattg atgattccca aattgatgag cttgccagca caatggactc caacaaagat
     1981 ggcaacatag actttaacga gtttttaagg gctttctatg tagtccataa atacgagacg
     2041 ccagagagcc ctttgaacaa atgagagagc ttagcatgaa caaaaccttc tcccagcccc
     2101 cttgaaaaca gctgacctca actctcggcc ttaacaagag cccttgaaac tcatagtagt
     2161 agagaaaagt agatcctaat tcgcaccata agtagatgca cagtgtgagt gttggcaggc
     2221 tttagcgaac tgctattggt aagactatgt taaatatcag ttgatgagat tcacttccat
     2281 tgccagtgat aaactgggtt tgagcctggg gctggtctca gatgacacct aaccatgaga
     2341 ccagagaaat ttagaagcat attcaaagga acccagagag caggaagaga aatcaatagg
     2401 tgtaatatct gtgagtgact gaggatgagg tgaatactaa actattgttg aaataaagta
     2461 tttccatcat caaaaaaaaa aaaaaaaaaa aaaaaaa
//
