LOCUS       XM_039104694             869 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus pancreatic progenitor cell
            differentiation and proliferation factor (Ppdpf), transcript
            variant X2, mRNA.
ACCESSION   XM_039104694
VERSION     XM_039104694.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039104694.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..869
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..869
                     /gene="Ppdpf"
                     /gene_synonym="RGD1310660"
                     /note="pancreatic progenitor cell differentiation and
                     proliferation factor; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 4 mRNAs, 23 ESTs, 37 long
                     SRA reads, 6 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 161
                     samples with support for all annotated introns"
                     /db_xref="GeneID:296470"
                     /db_xref="RGD:1310660"
     CDS             321..668
                     /gene="Ppdpf"
                     /gene_synonym="RGD1310660"
                     /codon_start=1
                     /product="pancreatic progenitor cell differentiation and
                     proliferation factor isoform X1"
                     /protein_id="XP_038960622.1"
                     /db_xref="GeneID:296470"
                     /db_xref="RGD:1310660"
                     /translation="MAAIPSSGSLVATHDYYRRRLGSSSSNSSGGSAEYPGDAVPHSP
                     GLPKADSGHWWASFFFGKSTLPFMAAVLESPEHSAESPQASRSPISCGLAPETMKKQP
                     VMHPSQTNSRAPS"
ORIGIN      
        1 cgccccacag tgttgtgcct gttgccctgc aggaaagcaa ctaagtacgc gcgtgcgcat
       61 aacgcgcgtg ggtcctaaag tagtggtgtt tcgtgagtta tccttgcaaa tgggcaccgt
      121 ggcctagcgc cccaggcgtt tccatccgta accttgcacc gaaacctgct aggaggggtc
      181 tccgccgagc cggccctggc tggttggagc cgcctggaag ccaggcactg tcaggacccg
      241 ggggactcga cgtacactcc ggtgtgcggt taccaggccc acattctgct ctcatctccg
      301 cagcgcctcg gccctgaagc atggcagcta tcccttccag cggctcgctc gtggctaccc
      361 atgactacta tcggcgacgt ctgggctcct cgtccagcaa cagctccggc ggaagtgcag
      421 agtacccggg ggacgccgtg ccccactccc cgggtcttcc caaagctgac tcgggccact
      481 ggtgggccag cttctttttc gggaaatcca ccctcccatt catggccgca gtgttggagt
      541 ctcctgagca ctcggcagaa tccccccagg cctccagaag cccgatctcc tgtggcctgg
      601 ctcctgaaac catgaagaag cagccagtca tgcatcctag ccagaccaac agcagggccc
      661 cgtcctgacc tgtcagaatc agcagactgc ccaagtttaa gtggtgctag accagagccc
      721 accctctcaa ccctccctgt aaactaggaa ggctaaacag acatgagcag gagctggaga
      781 gagcctatta gtttacagca ctgagctttc ctgaccccat aactgtgtct tccacaaagc
      841 agaaaataaa ctcacagcag ccatcctcc
//
